Variant report

Variant	rs4616758
Chromosome Location	chr4:106872553-106872554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106871716..106874028-chr4:106885869..106887755,2	MCF-7	breast:
2	chr4:106868073..106870731-chr4:106872485..106875295,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10007955	0.95[MKK][hapmap];0.85[YRI][hapmap]
rs10029346	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs10032388	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11097903	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11930350	0.90[YRI][hapmap]
rs13134201	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2069092	0.90[YRI][hapmap]
rs28397037	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28408688	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28453940	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28459481	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28480231	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28523884	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28530644	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28560134	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28588830	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28597911	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28676291	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28680557	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28680976	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4571330	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4627867	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4643812	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4699201	1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4699202	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4699203	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4699204	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4699205	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6826402	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6843517	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6855132	0.82[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.92[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836924	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73836926	0.96[EUR][1000 genomes]
rs73836933	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73836935	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73836936	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7663474	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7672530	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9790337	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9990974	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106831600-106878200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:106843600-106888400	Weak transcription	Pancreas	Pancrea
3	chr4:106853000-106879000	Weak transcription	Fetal Stomach	stomach
4	chr4:106854400-106886800	Weak transcription	GM12878-XiMat	blood
5	chr4:106864400-106877200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:106864600-106878200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr4:106864800-106886600	Weak transcription	Fetal Kidney	kidney
8	chr4:106866400-106884600	Weak transcription	HSMM	muscle
9	chr4:106867800-106884600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:106868200-106877400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr4:106868200-106886600	Weak transcription	Fetal Lung	lung
12	chr4:106868400-106877400	Weak transcription	Fetal Heart	heart
13	chr4:106868400-106892000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr4:106872000-106874200	Enhancers	HSMMtube	muscle
15	chr4:106872200-106872800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr4:106872200-106872800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr4:106872200-106872800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr4:106872200-106873000	Active TSS	Fetal Muscle Trunk	muscle
19	chr4:106872200-106874000	Weak transcription	Fetal Muscle Leg	muscle
20	chr4:106872200-106879600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr4:106872200-106884600	Weak transcription	Aorta	Aorta
22	chr4:106872200-106888400	Weak transcription	Lung	lung
23	chr4:106872400-106872800	Enhancers	Fetal Intestine Small	intestine
24	chr4:106872400-106873800	Weak transcription	Fetal Intestine Large	intestine

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