Variant report

Variant	rs9790337
Chromosome Location	chr4:106845682-106845683
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106838533..106840692-chr4:106845001..106847456,2	MCF-7	breast:

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10007955	0.81[AFR][1000 genomes]
rs10014611	0.84[AFR][1000 genomes]
rs10021687	0.85[AFR][1000 genomes]
rs10031934	0.85[AFR][1000 genomes]
rs10032388	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11097903	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13134201	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2069092	0.95[AFR][1000 genomes]
rs28397037	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28408688	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28453940	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28459481	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28480231	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28505995	0.92[AFR][1000 genomes]
rs28523884	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs28530644	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28540395	0.97[AFR][1000 genomes]
rs28542670	0.95[AFR][1000 genomes]
rs28560134	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28588830	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28597911	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28676291	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28680557	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28680976	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28690684	0.96[AFR][1000 genomes]
rs4394002	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs4571330	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4616758	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4627867	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4643812	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4699201	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4699202	0.86[AFR][1000 genomes]
rs4699203	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4699204	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4699205	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58094608	0.81[AFR][1000 genomes]
rs6815439	0.93[AFR][1000 genomes]
rs6826402	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6843517	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6855132	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73836924	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73836926	0.96[EUR][1000 genomes]
rs73836933	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73836935	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73836936	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73839086	0.95[AFR][1000 genomes]
rs7663474	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7664696	0.97[AFR][1000 genomes]
rs7672530	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9990974	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9992511	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106831600-106878200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:106837600-106867600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:106838000-106864400	Weak transcription	Small Intestine	intestine
4	chr4:106843200-106853800	Weak transcription	GM12878-XiMat	blood
5	chr4:106843600-106888400	Weak transcription	Pancreas	Pancrea
6	chr4:106843800-106858200	Weak transcription	Lung	lung
7	chr4:106844000-106845800	Enhancers	Fetal Heart	heart
8	chr4:106844600-106845800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:106844600-106845800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:106844600-106845800	Enhancers	Placenta Amnion	Placenta Amnion
11	chr4:106844600-106845800	Enhancers	NHEK	skin
12	chr4:106844800-106859400	Weak transcription	Aorta	Aorta
13	chr4:106845000-106846000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr4:106845000-106857800	Weak transcription	Fetal Muscle Leg	muscle
15	chr4:106845200-106850600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr4:106845400-106845800	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr4:106845400-106848400	Weak transcription	Fetal Intestine Large	intestine
18	chr4:106845400-106848400	Weak transcription	HSMMtube	muscle
19	chr4:106845400-106852600	Weak transcription	Fetal Intestine Small	intestine
20	chr4:106845400-106853800	Weak transcription	Psoas Muscle	Psoas
21	chr4:106845400-106855800	Weak transcription	HSMM	muscle
22	chr4:106845600-106846200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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