Variant report

Variant	rs6815439
Chromosome Location	chr4:106836188-106836189
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10007955	1.00[CEU][hapmap];0.90[YRI][hapmap];0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10014611	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10021687	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10027609	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10029346	0.82[YRI][hapmap]
rs10031934	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10032388	0.91[AFR][1000 genomes]
rs10470990	0.82[YRI][hapmap]
rs11731982	0.82[YRI][hapmap]
rs11930350	0.87[YRI][hapmap]
rs2069092	1.00[CEU][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28505995	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28540395	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28542670	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28690684	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4394002	0.88[AFR][1000 genomes]
rs4571330	0.88[AFR][1000 genomes]
rs4643812	0.86[YRI][hapmap]
rs4699202	0.80[AFR][1000 genomes]
rs4699203	0.81[AFR][1000 genomes]
rs4699204	0.87[AFR][1000 genomes]
rs58094608	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6826402	0.82[AFR][1000 genomes]
rs6855132	0.85[YRI][hapmap]
rs73839086	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7664696	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9790337	0.93[AFR][1000 genomes]
rs9992511	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106818000-106844800	Weak transcription	Psoas Muscle	Psoas
2	chr4:106819200-106836200	Weak transcription	Aorta	Aorta
3	chr4:106819200-106844600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:106821800-106844000	Weak transcription	HSMMtube	muscle
5	chr4:106822000-106836200	Weak transcription	Pancreas	Pancrea
6	chr4:106823800-106836400	Weak transcription	Fetal Lung	lung
7	chr4:106824600-106837400	Weak transcription	Small Intestine	intestine
8	chr4:106826200-106845000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr4:106831400-106836200	Weak transcription	Fetal Heart	heart
10	chr4:106831600-106878200	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr4:106833400-106837200	Weak transcription	Fetal Intestine Small	intestine
12	chr4:106835800-106836400	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr4:106835800-106839200	Enhancers	Fetal Intestine Large	intestine
14	chr4:106836000-106836400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr4:106836000-106836800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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