Variant report

Variant	rs58094608
Chromosome Location	chr4:106820547-106820548
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10007955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10014611	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10021687	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10027609	0.92[EUR][1000 genomes]
rs10031934	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2069092	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28505995	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28540395	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28542670	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28690684	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6815439	0.80[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6826402	0.86[AFR][1000 genomes]
rs73839086	0.86[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7664696	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9790337	0.81[AFR][1000 genomes]
rs9992511	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106818000-106824400	Weak transcription	Small Intestine	intestine
2	chr4:106818000-106844800	Weak transcription	Psoas Muscle	Psoas
3	chr4:106818200-106830400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:106819200-106821400	Weak transcription	HSMMtube	muscle
5	chr4:106819200-106836200	Weak transcription	Aorta	Aorta
6	chr4:106819200-106844600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:106819400-106820600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
8	chr4:106819400-106820800	Enhancers	Pancreas	Pancrea
9	chr4:106819400-106820800	Enhancers	HepG2	liver
10	chr4:106819400-106823400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr4:106819400-106825400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr4:106819400-106830600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr4:106819600-106820800	Weak transcription	Fetal Heart	heart
14	chr4:106820200-106820600	Enhancers	Fetal Intestine Small	intestine
15	chr4:106820200-106830400	Weak transcription	GM12878-XiMat	blood
16	chr4:106820400-106822200	Strong transcription	Fetal Intestine Large	intestine

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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