Variant report

Variant	rs10027609
Chromosome Location	chr4:106836894-106836895
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10007955	0.92[EUR][1000 genomes]
rs10014611	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10021687	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10031934	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2069092	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28505995	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28540395	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28542670	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28690684	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs58094608	0.92[EUR][1000 genomes]
rs6815439	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73839086	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7664696	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9992511	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106818000-106844800	Weak transcription	Psoas Muscle	Psoas
2	chr4:106819200-106844600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:106821800-106844000	Weak transcription	HSMMtube	muscle
4	chr4:106824600-106837400	Weak transcription	Small Intestine	intestine
5	chr4:106826200-106845000	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr4:106831600-106878200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr4:106833400-106837200	Weak transcription	Fetal Intestine Small	intestine
8	chr4:106835800-106839200	Enhancers	Fetal Intestine Large	intestine
9	chr4:106836200-106837000	Enhancers	Fetal Heart	heart
10	chr4:106836200-106837600	Enhancers	Aorta	Aorta
11	chr4:106836400-106837200	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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