Variant report

Variant	rs11731982
Chromosome Location	chr4:106820344-106820345
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106817938..106820838-chr4:106829455..106833276,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168743	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10000995	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10001493	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10004951	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10006990	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10007955	0.84[TSI][hapmap];0.82[YRI][hapmap]
rs10008593	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10013403	1.00[EUR][1000 genomes]
rs10027191	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10033978	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10470990	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11726457	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.92[TSI][hapmap];0.96[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17036356	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036363	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2069092	0.82[YRI][hapmap]
rs28369208	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28465019	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28481382	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28544485	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28557167	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6850909	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73839049	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9992491	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106818000-106824400	Weak transcription	Small Intestine	intestine
2	chr4:106818000-106844800	Weak transcription	Psoas Muscle	Psoas
3	chr4:106818200-106830400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:106819200-106821400	Weak transcription	HSMMtube	muscle
5	chr4:106819200-106836200	Weak transcription	Aorta	Aorta
6	chr4:106819200-106844600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:106819400-106820600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
8	chr4:106819400-106820800	Enhancers	Pancreas	Pancrea
9	chr4:106819400-106820800	Enhancers	HepG2	liver
10	chr4:106819400-106823400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr4:106819400-106825400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr4:106819400-106830600	Weak transcription	Duodenum Mucosa	Duodenum
13	chr4:106819600-106820800	Weak transcription	Fetal Heart	heart
14	chr4:106820000-106820400	Genic enhancers	Fetal Intestine Large	intestine
15	chr4:106820200-106820600	Enhancers	Fetal Intestine Small	intestine
16	chr4:106820200-106830400	Weak transcription	GM12878-XiMat	blood

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