Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10000995	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10001493	0.91[EUR][1000 genomes]
rs10004951	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10006990	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10008593	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10013403	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10027191	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10033978	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10470990	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11726457	0.91[EUR][1000 genomes]
rs11731982	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12511099	0.83[AFR][1000 genomes]
rs17036356	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17036363	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28369208	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28465019	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28481382	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28544485	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4380529	0.84[AFR][1000 genomes]
rs4635819	0.95[AFR][1000 genomes]
rs6838274	0.90[AFR][1000 genomes]
rs6850909	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73839049	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7669108	0.87[AFR][1000 genomes]
rs9992491	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106818000-106844800	Weak transcription	Psoas Muscle	Psoas
2	chr4:106819200-106844600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:106821800-106844000	Weak transcription	HSMMtube	muscle
4	chr4:106823800-106836400	Weak transcription	Fetal Lung	lung
5	chr4:106824600-106837400	Weak transcription	Small Intestine	intestine
6	chr4:106826200-106845000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr4:106831600-106878200	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr4:106833400-106837200	Weak transcription	Fetal Intestine Small	intestine
9	chr4:106835800-106836400	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr4:106835800-106839200	Enhancers	Fetal Intestine Large	intestine
11	chr4:106836000-106836400	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr4:106836000-106836800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr4:106836200-106836600	Enhancers	H1 Cell Line	embryonic stem cell
14	chr4:106836200-106836600	Enhancers	Pancreas	Pancrea
15	chr4:106836200-106837000	Enhancers	Fetal Heart	heart
16	chr4:106836200-106837600	Enhancers	Aorta	Aorta

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