Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10000995	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10001493	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10004951	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10006990	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10008593	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10013403	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10027191	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10033978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10470990	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11726457	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11731982	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17036356	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17036363	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28369208	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28465019	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28481382	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28557167	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6850909	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73839049	0.92[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9992491	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106818000-106844800	Weak transcription	Psoas Muscle	Psoas
2	chr4:106819200-106844600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:106821800-106844000	Weak transcription	HSMMtube	muscle
4	chr4:106826200-106845000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr4:106831600-106878200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr4:106835800-106839200	Enhancers	Fetal Intestine Large	intestine
7	chr4:106837400-106838000	Enhancers	Small Intestine	intestine
8	chr4:106837600-106844000	Weak transcription	Aorta	Aorta
9	chr4:106837600-106867600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr4:106837800-106838800	Enhancers	Fetal Heart	heart
11	chr4:106837800-106839200	Enhancers	Fetal Intestine Small	intestine

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