Variant report

Variant	rs10004951
Chromosome Location	chr4:106844048-106844049
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10000995	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10001493	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10006990	1.00[CEU][hapmap];0.89[YRI][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10008593	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10013403	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10027191	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10033978	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10470990	1.00[CEU][hapmap];0.83[MKK][hapmap];0.83[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10856978	0.82[YRI][hapmap]
rs11726457	1.00[CEU][hapmap];0.81[MKK][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11731982	1.00[CEU][hapmap];0.83[MKK][hapmap];0.92[TSI][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17036356	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17036363	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28369208	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28465019	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28481382	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28544485	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28557167	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4443288	0.80[LWK][hapmap];0.86[YRI][hapmap]
rs4507363	0.82[LWK][hapmap];0.86[YRI][hapmap]
rs4511999	0.82[YRI][hapmap]
rs6533223	0.85[YRI][hapmap]
rs6838274	0.92[YRI][hapmap]
rs6850909	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73839049	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7696538	0.82[YRI][hapmap]
rs9992491	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106818000-106844800	Weak transcription	Psoas Muscle	Psoas
2	chr4:106819200-106844600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:106826200-106845000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr4:106831600-106878200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr4:106837600-106867600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr4:106838000-106864400	Weak transcription	Small Intestine	intestine
7	chr4:106843000-106844800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr4:106843200-106853800	Weak transcription	GM12878-XiMat	blood
9	chr4:106843400-106845400	Enhancers	Fetal Intestine Small	intestine
10	chr4:106843600-106888400	Weak transcription	Pancreas	Pancrea
11	chr4:106843800-106858200	Weak transcription	Lung	lung
12	chr4:106844000-106844800	Enhancers	Aorta	Aorta
13	chr4:106844000-106845400	Enhancers	Fetal Intestine Large	intestine
14	chr4:106844000-106845400	Enhancers	HSMMtube	muscle
15	chr4:106844000-106845800	Enhancers	Fetal Heart	heart

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