Variant report

Variant	rs10856978
Chromosome Location	chr4:106848703-106848704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106847180..106848877-chr4:106850398..106852310,2	K562	blood:

Variant related genes	Relation type
ENSG00000250740	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10014558	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs10029346	0.80[CEU][hapmap]
rs10033065	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11930350	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12511099	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13103583	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13107002	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13120676	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28420290	0.91[EUR][1000 genomes]
rs4074126	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4074127	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4074792	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4235416	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4264830	1.00[EUR][1000 genomes]
rs4340795	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4380529	1.00[EUR][1000 genomes]
rs4380530	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4394002	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4403054	1.00[EUR][1000 genomes]
rs4443288	0.89[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4488941	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4507363	1.00[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4511999	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4546247	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4616757	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4635819	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4643812	0.80[CEU][hapmap]
rs4699202	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58168413	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6533223	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs6826426	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6838274	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7669108	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7673502	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7677312	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7696538	0.89[CEU][hapmap];0.93[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106831600-106878200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:106837600-106867600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:106838000-106864400	Weak transcription	Small Intestine	intestine
4	chr4:106843200-106853800	Weak transcription	GM12878-XiMat	blood
5	chr4:106843600-106888400	Weak transcription	Pancreas	Pancrea
6	chr4:106843800-106858200	Weak transcription	Lung	lung
7	chr4:106844800-106859400	Weak transcription	Aorta	Aorta
8	chr4:106845000-106857800	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:106845200-106850600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr4:106845400-106852600	Weak transcription	Fetal Intestine Small	intestine
11	chr4:106845400-106853800	Weak transcription	Psoas Muscle	Psoas
12	chr4:106845400-106855800	Weak transcription	HSMM	muscle
13	chr4:106845800-106857600	Weak transcription	Fetal Heart	heart
14	chr4:106847200-106851200	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr4:106848400-106849200	Strong transcription	HSMMtube	muscle
16	chr4:106848400-106850400	Strong transcription	Fetal Intestine Large	intestine

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