Variant report

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr4:106851734-106852122	T-47D	breast:	n/a	n/a
2	FOXA1	chr4:106851775-106852138	HepG2	liver:	n/a	n/a
3	FOXA2	chr4:106851821-106852037	HepG2	liver:	n/a	n/a
4	FOXA1	chr4:106851796-106852106	HepG2	liver:	n/a	n/a
5	FOXA1	chr4:106851751-106852141	HepG2	liver:	n/a	n/a
6	FOXA1	chr4:106851813-106852036	T-47D	breast:	n/a	n/a
7	FOXA1	chr4:106851752-106852048	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
ENSG00000250740	TF binding region

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10029346	0.80[CEU][hapmap]
rs10033065	1.00[EUR][1000 genomes]
rs10856978	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs11930350	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12511099	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13103583	1.00[EUR][1000 genomes]
rs13107002	1.00[EUR][1000 genomes]
rs13120676	1.00[EUR][1000 genomes]
rs28420290	0.91[EUR][1000 genomes]
rs4074126	1.00[EUR][1000 genomes]
rs4074127	1.00[EUR][1000 genomes]
rs4074792	0.96[EUR][1000 genomes]
rs4235416	1.00[EUR][1000 genomes]
rs4264830	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4340795	1.00[EUR][1000 genomes]
rs4380529	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4380530	0.85[EUR][1000 genomes]
rs4394002	1.00[EUR][1000 genomes]
rs4403054	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4443288	0.89[CEU][hapmap];1.00[EUR][1000 genomes]
rs4488941	0.98[EUR][1000 genomes]
rs4507363	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4511999	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs4546247	0.88[EUR][1000 genomes]
rs4616757	1.00[EUR][1000 genomes]
rs4635819	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4643812	0.80[CEU][hapmap]
rs4699202	1.00[EUR][1000 genomes]
rs58168413	1.00[EUR][1000 genomes]
rs6533223	1.00[CEU][hapmap]
rs6826426	1.00[EUR][1000 genomes]
rs6838274	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7669108	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7673502	1.00[EUR][1000 genomes]
rs7696538	0.89[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106831600-106878200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:106837600-106867600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:106838000-106864400	Weak transcription	Small Intestine	intestine
4	chr4:106843200-106853800	Weak transcription	GM12878-XiMat	blood
5	chr4:106843600-106888400	Weak transcription	Pancreas	Pancrea
6	chr4:106843800-106858200	Weak transcription	Lung	lung
7	chr4:106844800-106859400	Weak transcription	Aorta	Aorta
8	chr4:106845000-106857800	Weak transcription	Fetal Muscle Leg	muscle
9	chr4:106845400-106852600	Weak transcription	Fetal Intestine Small	intestine
10	chr4:106845400-106853800	Weak transcription	Psoas Muscle	Psoas
11	chr4:106845400-106855800	Weak transcription	HSMM	muscle
12	chr4:106845800-106857600	Weak transcription	Fetal Heart	heart
13	chr4:106849200-106857800	Weak transcription	HSMMtube	muscle
14	chr4:106850000-106860600	Weak transcription	Fetal Muscle Trunk	muscle
15	chr4:106850400-106859400	Weak transcription	Fetal Intestine Large	intestine
16	chr4:106851200-106852600	Strong transcription	Cortex derived primary cultured neurospheres	brain
17	chr4:106851200-106871800	Weak transcription	Esophagus	oesophagus
18	chr4:106851600-106863800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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