Variant report

Variant	rs4635819
Chromosome Location	chr4:106858898-106858899
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106853850..106856406-chr4:106858179..106860980,2	K562	blood:

Variant related genes	Relation type
ENSG00000250740	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10006990	0.82[AFR][1000 genomes]
rs10008593	0.92[AFR][1000 genomes]
rs10013403	0.82[AFR][1000 genomes]
rs10029346	0.80[CEU][hapmap]
rs10033065	1.00[EUR][1000 genomes]
rs10856978	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11930350	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12511099	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13103583	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs13107002	1.00[EUR][1000 genomes]
rs13120676	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036356	0.81[AFR][1000 genomes]
rs17036363	0.82[AFR][1000 genomes]
rs28369208	0.81[AFR][1000 genomes]
rs28420290	0.91[EUR][1000 genomes]
rs28557167	0.95[AFR][1000 genomes]
rs4074126	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4074127	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4074792	0.96[EUR][1000 genomes]
rs4235416	1.00[EUR][1000 genomes]
rs4264830	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4340795	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4380529	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4380530	0.85[EUR][1000 genomes]
rs4394002	1.00[EUR][1000 genomes]
rs4403054	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4443288	0.89[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4488941	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4507363	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4511999	1.00[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4546247	0.88[EUR][1000 genomes]
rs4616757	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4643812	0.80[CEU][hapmap]
rs4699202	1.00[EUR][1000 genomes]
rs58168413	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6533223	1.00[CEU][hapmap]
rs6826426	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6838274	1.00[CEU][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7438349	0.84[AMR][1000 genomes]
rs7669108	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7673502	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7677312	1.00[CEU][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7696538	0.89[CEU][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106831600-106878200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:106837600-106867600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:106838000-106864400	Weak transcription	Small Intestine	intestine
4	chr4:106843600-106888400	Weak transcription	Pancreas	Pancrea
5	chr4:106844800-106859400	Weak transcription	Aorta	Aorta
6	chr4:106850000-106860600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr4:106850400-106859400	Weak transcription	Fetal Intestine Large	intestine
8	chr4:106851200-106871800	Weak transcription	Esophagus	oesophagus
9	chr4:106851600-106863800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr4:106852200-106863600	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr4:106852600-106859600	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr4:106853000-106879000	Weak transcription	Fetal Stomach	stomach
13	chr4:106854000-106865600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr4:106854000-106866600	Weak transcription	Fetal Intestine Small	intestine
15	chr4:106854400-106886800	Weak transcription	GM12878-XiMat	blood
16	chr4:106854600-106866400	Weak transcription	Duodenum Mucosa	Duodenum
17	chr4:106856000-106865400	Weak transcription	HSMM	muscle
18	chr4:106858200-106859200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr4:106858400-106861600	Weak transcription	Fetal Lung	lung
20	chr4:106858400-106864400	Weak transcription	Fetal Muscle Leg	muscle
21	chr4:106858400-106864400	Weak transcription	Right Atrium	heart
22	chr4:106858400-106871800	Weak transcription	Lung	lung
23	chr4:106858600-106861200	Weak transcription	HSMMtube	muscle
24	chr4:106858800-106859200	Weak transcription	Fetal Heart	heart
25	chr4:106858800-106859600	Enhancers	Adipose Nuclei	Adipose
26	chr4:106858800-106860000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr4:106858800-106863400	Weak transcription	Fetal Kidney	kidney

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