Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106817938..106820838-chr4:106829455..106833276,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168743	Chromatin interaction

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10000995	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10001493	0.97[EUR][1000 genomes]
rs10004951	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10006990	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10008593	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10013403	1.00[CEU][hapmap];0.95[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10027191	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10033978	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10470990	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11726457	0.97[EUR][1000 genomes]
rs11731982	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036363	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036366	1.00[CEU][hapmap]
rs28369208	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28465019	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28481382	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28544485	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28557167	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4571331	1.00[CEU][hapmap]
rs4635819	0.81[AFR][1000 genomes]
rs6850909	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73839049	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9992491	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106818000-106824400	Weak transcription	Small Intestine	intestine
2	chr4:106818000-106844800	Weak transcription	Psoas Muscle	Psoas
3	chr4:106818200-106830400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:106819200-106821400	Weak transcription	HSMMtube	muscle
5	chr4:106819200-106836200	Weak transcription	Aorta	Aorta
6	chr4:106819200-106844600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr4:106819400-106823400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr4:106819400-106825400	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr4:106819400-106830600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr4:106820200-106830400	Weak transcription	GM12878-XiMat	blood
11	chr4:106820400-106822200	Strong transcription	Fetal Intestine Large	intestine
12	chr4:106820800-106821000	Weak transcription	Fetal Intestine Small	intestine
13	chr4:106820800-106821800	Weak transcription	Pancreas	Pancrea
14	chr4:106820800-106825600	Enhancers	Fetal Heart	heart

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