Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106815951..106819883-chr4:106823157..106826163,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138785	Chromatin interaction
ENSG00000168743	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10000995	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10001493	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10004951	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10008593	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10013403	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10027191	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10033978	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10470990	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11726457	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs11731982	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036356	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036363	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28369208	0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28465019	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28481382	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28544485	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28557167	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4635819	0.82[AFR][1000 genomes]
rs6838274	0.93[YRI][hapmap]
rs6850909	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73839049	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9992491	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106818000-106844800	Weak transcription	Psoas Muscle	Psoas
2	chr4:106818200-106830400	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr4:106819200-106836200	Weak transcription	Aorta	Aorta
4	chr4:106819200-106844600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr4:106819400-106830600	Weak transcription	Duodenum Mucosa	Duodenum
6	chr4:106820200-106830400	Weak transcription	GM12878-XiMat	blood
7	chr4:106820800-106825600	Enhancers	Fetal Heart	heart
8	chr4:106821800-106844000	Weak transcription	HSMMtube	muscle
9	chr4:106822000-106836200	Weak transcription	Pancreas	Pancrea
10	chr4:106823800-106826200	Strong transcription	Fetal Intestine Large	intestine
11	chr4:106823800-106836400	Weak transcription	Fetal Lung	lung
12	chr4:106824200-106826200	Strong transcription	Fetal Intestine Small	intestine
13	chr4:106824600-106837400	Weak transcription	Small Intestine	intestine
14	chr4:106825400-106826200	Strong transcription	Cortex derived primary cultured neurospheres	brain

Quick Search: