Variant report

Variant	rs10008593
Chromosome Location	chr4:106838334-106838335
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10000995	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10001493	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs10004951	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10006990	1.00[CEU][hapmap];0.93[YRI][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10013403	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10027191	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10033978	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10470990	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11726457	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs11731982	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12511099	0.81[AFR][1000 genomes]
rs17036356	0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17036363	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28369208	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28465019	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28481382	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28544485	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28557167	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4264830	0.81[AFR][1000 genomes]
rs4380529	0.85[AFR][1000 genomes]
rs4635819	0.92[AFR][1000 genomes]
rs6533223	0.80[YRI][hapmap]
rs6838274	0.96[YRI][hapmap];0.88[AFR][1000 genomes]
rs6850909	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73839049	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7669108	0.85[AFR][1000 genomes]
rs9992491	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106818000-106844800	Weak transcription	Psoas Muscle	Psoas
2	chr4:106819200-106844600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr4:106821800-106844000	Weak transcription	HSMMtube	muscle
4	chr4:106826200-106845000	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr4:106831600-106878200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr4:106835800-106839200	Enhancers	Fetal Intestine Large	intestine
7	chr4:106837600-106844000	Weak transcription	Aorta	Aorta
8	chr4:106837600-106867600	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr4:106837800-106838800	Enhancers	Fetal Heart	heart
10	chr4:106837800-106839200	Enhancers	Fetal Intestine Small	intestine
11	chr4:106838000-106864400	Weak transcription	Small Intestine	intestine
12	chr4:106838200-106839000	Enhancers	Duodenum Mucosa	Duodenum

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