Variant report

Variant	rs10470990
Chromosome Location	chr4:106821578-106821579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106817011..106818984-chr4:106821263..106824254,3	K562	blood:

Variant related genes	Relation type
ENSG00000138785	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10000995	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10001493	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10004951	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10006990	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10007955	0.91[TSI][hapmap];0.82[YRI][hapmap]
rs10008593	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10013403	1.00[EUR][1000 genomes]
rs10027191	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10033978	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11726457	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11731982	0.93[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036356	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036363	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2069092	0.82[YRI][hapmap]
rs28369208	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28465019	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28481382	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28544485	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs28557167	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6850909	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73839049	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9992491	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106818000-106824400	Weak transcription	Small Intestine	intestine
2	chr4:106818000-106844800	Weak transcription	Psoas Muscle	Psoas
3	chr4:106818200-106830400	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr4:106819200-106836200	Weak transcription	Aorta	Aorta
5	chr4:106819200-106844600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:106819400-106823400	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr4:106819400-106825400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr4:106819400-106830600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr4:106820200-106830400	Weak transcription	GM12878-XiMat	blood
10	chr4:106820400-106822200	Strong transcription	Fetal Intestine Large	intestine
11	chr4:106820800-106821800	Weak transcription	Pancreas	Pancrea
12	chr4:106820800-106825600	Enhancers	Fetal Heart	heart
13	chr4:106821200-106822400	Weak transcription	Fetal Intestine Small	intestine
14	chr4:106821400-106821600	Genic enhancers	HSMMtube	muscle

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