Variant report

Variant	rs4571331
Chromosome Location	chr4:106876915-106876916
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106875014..106877811-chr4:107237843..107240492,2	K562	blood:
2	chr4:106875672..106878254-chr4:106880438..106883058,3	K562	blood:

Variant related genes	Relation type
ENSG00000145348	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10013403	1.00[CEU][hapmap]
rs11730037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11730923	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036356	1.00[CEU][hapmap]
rs17036366	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs35253385	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4527479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72968685	1.00[EUR][1000 genomes]
rs9715050	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106831600-106878200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:106843600-106888400	Weak transcription	Pancreas	Pancrea
3	chr4:106853000-106879000	Weak transcription	Fetal Stomach	stomach
4	chr4:106854400-106886800	Weak transcription	GM12878-XiMat	blood
5	chr4:106864400-106877200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:106864600-106878200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr4:106864800-106886600	Weak transcription	Fetal Kidney	kidney
8	chr4:106866400-106884600	Weak transcription	HSMM	muscle
9	chr4:106867800-106884600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:106868200-106877400	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr4:106868200-106886600	Weak transcription	Fetal Lung	lung
12	chr4:106868400-106877400	Weak transcription	Fetal Heart	heart
13	chr4:106868400-106892000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr4:106872200-106879600	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr4:106872200-106884600	Weak transcription	Aorta	Aorta
16	chr4:106872200-106888400	Weak transcription	Lung	lung
17	chr4:106872800-106877400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr4:106872800-106877800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr4:106872800-106884600	Weak transcription	Fetal Intestine Small	intestine
20	chr4:106873000-106888400	Weak transcription	Fetal Muscle Trunk	muscle
21	chr4:106874200-106877400	Weak transcription	HSMMtube	muscle
22	chr4:106874400-106877400	Weak transcription	Fetal Muscle Leg	muscle
23	chr4:106875800-106877400	Weak transcription	Psoas Muscle	Psoas
24	chr4:106876000-106878200	Weak transcription	Right Atrium	heart
25	chr4:106876200-106879000	Weak transcription	Fetal Intestine Large	intestine

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