Variant report

Variant	rs11730037
Chromosome Location	chr4:106845508-106845509
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106838533..106840692-chr4:106845001..106847456,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11730923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036366	0.82[EUR][1000 genomes]
rs35253385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4527479	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4571331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72968685	1.00[EUR][1000 genomes]
rs9715050	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106831600-106878200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:106837600-106867600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:106838000-106864400	Weak transcription	Small Intestine	intestine
4	chr4:106843200-106853800	Weak transcription	GM12878-XiMat	blood
5	chr4:106843600-106888400	Weak transcription	Pancreas	Pancrea
6	chr4:106843800-106858200	Weak transcription	Lung	lung
7	chr4:106844000-106845800	Enhancers	Fetal Heart	heart
8	chr4:106844600-106845800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr4:106844600-106845800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr4:106844600-106845800	Enhancers	Placenta Amnion	Placenta Amnion
11	chr4:106844600-106845800	Enhancers	NHEK	skin
12	chr4:106844800-106859400	Weak transcription	Aorta	Aorta
13	chr4:106845000-106845600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr4:106845000-106846000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr4:106845000-106857800	Weak transcription	Fetal Muscle Leg	muscle
16	chr4:106845200-106850600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr4:106845400-106845800	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr4:106845400-106848400	Weak transcription	Fetal Intestine Large	intestine
19	chr4:106845400-106848400	Weak transcription	HSMMtube	muscle
20	chr4:106845400-106852600	Weak transcription	Fetal Intestine Small	intestine
21	chr4:106845400-106853800	Weak transcription	Psoas Muscle	Psoas
22	chr4:106845400-106855800	Weak transcription	HSMM	muscle

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