Variant report

Variant	rs9715050
Chromosome Location	chr4:106881020-106881021
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:106880865..106883226-chr4:106885704..106887688,2	MCF-7	breast:
2	chr4:106875672..106878254-chr4:106880438..106883058,3	K562	blood:
3	chr4:106868581..106872144-chr4:106880844..106883736,4	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11730037	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11730923	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17036366	0.82[EUR][1000 genomes]
rs35253385	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4527479	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4571331	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72968685	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014993	chr4:106796019-106980727	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106843600-106888400	Weak transcription	Pancreas	Pancrea
2	chr4:106854400-106886800	Weak transcription	GM12878-XiMat	blood
3	chr4:106864800-106886600	Weak transcription	Fetal Kidney	kidney
4	chr4:106866400-106884600	Weak transcription	HSMM	muscle
5	chr4:106867800-106884600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr4:106868200-106886600	Weak transcription	Fetal Lung	lung
7	chr4:106868400-106892000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr4:106872200-106884600	Weak transcription	Aorta	Aorta
9	chr4:106872200-106888400	Weak transcription	Lung	lung
10	chr4:106872800-106884600	Weak transcription	Fetal Intestine Small	intestine
11	chr4:106873000-106888400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr4:106878000-106887000	Weak transcription	Psoas Muscle	Psoas
13	chr4:106878000-106888400	Weak transcription	Ovary	ovary
14	chr4:106878600-106887000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr4:106879000-106881800	Weak transcription	Fetal Heart	heart
16	chr4:106879000-106887200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr4:106879000-106888200	Weak transcription	Fetal Muscle Leg	muscle
18	chr4:106879200-106882000	Weak transcription	Fetal Intestine Large	intestine
19	chr4:106879200-106888200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr4:106879800-106884800	Weak transcription	Rectal Mucosa Donor 29	rectum
21	chr4:106879800-106886600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr4:106880200-106882400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr4:106880400-106883200	Strong transcription	HSMMtube	muscle
24	chr4:106880600-106884400	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr4:106881000-106884600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr4:106881000-106890400	Weak transcription	Small Intestine	intestine

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