Variant report

Variant	rs4617770
Chromosome Location	chr14:64511933-64511934
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10132638	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10138253	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10145787	0.83[EUR][1000 genomes]
rs11621129	0.85[EUR][1000 genomes]
rs1255954	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1255957	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1255959	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1255962	0.84[EUR][1000 genomes]
rs1255963	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1255966	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1255967	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1255969	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1255970	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1255971	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1255972	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1255974	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1255975	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1262240	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1266925	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1954051	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2153476	0.85[EUR][1000 genomes]
rs2185453	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2357342	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2357343	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2357344	0.84[EUR][1000 genomes]
rs2357345	0.96[EUR][1000 genomes]
rs28607037	0.81[AMR][1000 genomes]
rs28669707	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2884158	0.85[EUR][1000 genomes]
rs3829767	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4027402	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs4027403	0.85[EUR][1000 genomes]
rs4566057	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4899132	0.83[EUR][1000 genomes]
rs4902264	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs6573543	0.85[EUR][1000 genomes]
rs7158401	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7158815	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8010699	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8010911	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8011969	0.85[EUR][1000 genomes]
rs8016043	0.84[EUR][1000 genomes]
rs963289	0.91[EUR][1000 genomes]
rs9783605	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
3	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64457000-64519200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr14:64460000-64513400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:64466600-64513200	Weak transcription	NHEK	skin
4	chr14:64466600-64593200	Weak transcription	Colon Smooth Muscle	Colon
5	chr14:64468800-64527200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:64469600-64518400	Weak transcription	HMEC	breast
7	chr14:64473000-64515000	Weak transcription	Hela-S3	cervix
8	chr14:64475200-64527200	Weak transcription	Fetal Heart	heart
9	chr14:64475600-64518400	Weak transcription	Gastric	stomach
10	chr14:64479200-64526200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr14:64481400-64574000	Weak transcription	Stomach Mucosa	stomach
12	chr14:64489000-64518400	Weak transcription	HUVEC	blood vessel
13	chr14:64489200-64526600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr14:64489400-64568600	Weak transcription	Small Intestine	intestine
15	chr14:64490000-64515800	Weak transcription	Right Ventricle	heart
16	chr14:64491200-64518400	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr14:64491200-64565200	Weak transcription	Rectal Smooth Muscle	rectum
18	chr14:64492000-64518600	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr14:64492200-64518400	Weak transcription	Fetal Brain Male	brain
20	chr14:64492200-64547400	Weak transcription	Colonic Mucosa	Colon
21	chr14:64492400-64518600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr14:64492600-64513200	Weak transcription	Aorta	Aorta
23	chr14:64492600-64513400	Weak transcription	Spleen	Spleen
24	chr14:64493600-64513000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr14:64498200-64516600	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr14:64498600-64518400	Weak transcription	Primary B cells from cord blood	blood
27	chr14:64498800-64512800	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr14:64498800-64518400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
29	chr14:64498800-64518400	Weak transcription	Fetal Kidney	kidney
30	chr14:64499000-64515600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
31	chr14:64499000-64518600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr14:64499000-64518600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr14:64499000-64538800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr14:64499200-64512200	Weak transcription	Adipose Nuclei	Adipose
35	chr14:64499200-64512800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr14:64499200-64513400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr14:64499200-64516400	Weak transcription	Ovary	ovary
38	chr14:64499200-64516400	Weak transcription	Rectal Mucosa Donor 29	rectum
39	chr14:64499200-64518200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr14:64499200-64518400	Weak transcription	Liver	Liver
41	chr14:64499400-64512600	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr14:64499400-64513200	Weak transcription	Fetal Muscle Trunk	muscle
43	chr14:64499400-64513200	Weak transcription	Sigmoid Colon	Sigmoid Colon
44	chr14:64499800-64513200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr14:64500000-64514200	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr14:64500400-64514000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr14:64500400-64515200	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr14:64502000-64515200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr14:64502400-64518200	Weak transcription	GM12878-XiMat	blood
50	chr14:64503200-64513400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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