Variant report

Variant	rs4902264
Chromosome Location	chr14:64491695-64491696
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64490181..64492007-chr14:64498703..64500791,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10132638	0.83[EUR][1000 genomes]
rs10138253	0.83[EUR][1000 genomes]
rs10145787	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10151127	0.91[CEU][hapmap];0.86[GIH][hapmap];0.92[TSI][hapmap]
rs11621129	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11622913	0.97[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1255953	0.83[TSI][hapmap]
rs1255954	0.92[CEU][hapmap];0.88[JPT][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs1255957	0.80[EUR][1000 genomes]
rs1255959	0.92[CEU][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs1255963	0.81[EUR][1000 genomes]
rs1255965	0.83[CEU][hapmap];0.85[TSI][hapmap]
rs1255966	0.92[CEU][hapmap];0.81[JPT][hapmap];0.81[EUR][1000 genomes]
rs1255967	0.92[CEU][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap];0.89[TSI][hapmap];0.81[EUR][1000 genomes]
rs1255969	0.83[EUR][1000 genomes]
rs1255971	0.83[EUR][1000 genomes]
rs1255972	0.83[EUR][1000 genomes]
rs1255974	0.81[EUR][1000 genomes]
rs1255975	0.83[EUR][1000 genomes]
rs1262240	0.92[CEU][hapmap];0.85[CHD][hapmap];0.88[JPT][hapmap];0.86[TSI][hapmap];0.81[EUR][1000 genomes]
rs1266925	0.83[EUR][1000 genomes]
rs1954051	0.83[EUR][1000 genomes]
rs2153476	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2185453	0.83[EUR][1000 genomes]
rs2357342	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2357343	0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2357344	0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2357345	0.86[EUR][1000 genomes]
rs28607037	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28669707	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2884158	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3829767	0.92[CEU][hapmap];0.89[CHD][hapmap];0.88[JPT][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs4027402	0.94[ASW][hapmap];1.00[CEU][hapmap];0.89[CHD][hapmap];0.81[GIH][hapmap];0.94[JPT][hapmap];0.95[LWK][hapmap];0.89[MKK][hapmap];0.93[TSI][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4027403	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4027404	1.00[CEU][hapmap];0.89[CHD][hapmap];0.94[JPT][hapmap];0.93[TSI][hapmap]
rs4027405	0.91[CEU][hapmap];0.92[TSI][hapmap]
rs4566057	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4617770	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4899132	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6573543	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7158401	0.92[CEU][hapmap]
rs7158815	0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8010699	0.92[CEU][hapmap];0.89[CHD][hapmap];0.88[JPT][hapmap];0.89[TSI][hapmap];0.83[EUR][1000 genomes]
rs8010911	0.92[CEU][hapmap];0.88[JPT][hapmap];0.83[EUR][1000 genomes]
rs8011969	0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8016043	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs963289	0.92[CEU][hapmap];0.88[JPT][hapmap];0.81[EUR][1000 genomes]
rs9783605	0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1038825	chr14:64109441-64491720	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv902019	chr14:64395569-64882380	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	nsv456326	chr14:64420413-64754361	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv564905	chr14:64420413-64754361	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv902020	chr14:64434288-64506541	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv1821411	chr14:64488037-64506541	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64457000-64502000	Strong transcription	Placenta	Placenta
2	chr14:64457000-64519200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr14:64460000-64513400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr14:64460600-64495000	Weak transcription	NHDF-Ad	bronchial
5	chr14:64466600-64513200	Weak transcription	NHEK	skin
6	chr14:64466600-64593200	Weak transcription	Colon Smooth Muscle	Colon
7	chr14:64468800-64527200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr14:64469600-64518400	Weak transcription	HMEC	breast
9	chr14:64471800-64505200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr14:64473000-64515000	Weak transcription	Hela-S3	cervix
11	chr14:64474400-64505000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr14:64475200-64527200	Weak transcription	Fetal Heart	heart
13	chr14:64475600-64505600	Weak transcription	Esophagus	oesophagus
14	chr14:64475600-64518400	Weak transcription	Gastric	stomach
15	chr14:64478800-64492200	Weak transcription	Aorta	Aorta
16	chr14:64479200-64526200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr14:64480400-64494200	Weak transcription	HepG2	liver
18	chr14:64481400-64503000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:64481400-64574000	Weak transcription	Stomach Mucosa	stomach
20	chr14:64481600-64492200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr14:64481600-64502400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr14:64482200-64500200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr14:64482400-64493600	Strong transcription	Primary T helper cells PMA-I stimulated	--
24	chr14:64482400-64503800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr14:64482600-64496000	Weak transcription	Pancreatic Islets	Pancreatic Islet
26	chr14:64482800-64503800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
27	chr14:64483800-64503800	Strong transcription	Primary T cells fromperipheralblood	blood
28	chr14:64484000-64503800	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr14:64484200-64500400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr14:64484400-64499200	Strong transcription	Primary T cells from cord blood	blood
31	chr14:64485800-64499000	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr14:64486000-64497800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr14:64486000-64503200	Strong transcription	Dnd41	blood
34	chr14:64486200-64501800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr14:64486400-64492400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr14:64486800-64498600	Strong transcription	Duodenum Mucosa	Duodenum
37	chr14:64487000-64493600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
38	chr14:64487000-64494200	Strong transcription	Skeletal Muscle Female	skeletal muscle
39	chr14:64487000-64499200	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr14:64487200-64500400	Strong transcription	Primary neutrophils fromperipheralblood	blood
41	chr14:64487400-64493600	Strong transcription	Fetal Kidney	kidney
42	chr14:64487400-64494600	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr14:64487400-64495600	Strong transcription	Fetal Intestine Large	intestine
44	chr14:64487400-64499000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
45	chr14:64487600-64493600	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr14:64487600-64498800	Strong transcription	HUES48 Cell Line	embryonic stem cell
47	chr14:64487800-64492400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
48	chr14:64487800-64492600	Strong transcription	Primary B cells from cord blood	blood
49	chr14:64487800-64499200	Strong transcription	Liver	Liver
50	chr14:64487800-64501600	Weak transcription	NHLF	lung

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