Variant report

Variant	rs4620176
Chromosome Location	chr7:19718929-19718930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11771348	0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12532153	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12534757	0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12536095	0.85[AMR][1000 genomes]
rs12536706	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12536835	0.84[EUR][1000 genomes]
rs12667746	0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12667862	0.89[EUR][1000 genomes]
rs17141738	0.82[EUR][1000 genomes]
rs3735617	0.85[CEU][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59113291	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60527323	0.85[AMR][1000 genomes]
rs67568939	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67733453	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6962595	0.85[CEU][hapmap];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72591413	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72591414	0.87[EUR][1000 genomes]
rs72591425	0.88[EUR][1000 genomes]
rs72591428	0.89[EUR][1000 genomes]
rs72591431	0.80[EUR][1000 genomes]
rs7803245	0.90[EUR][1000 genomes]
rs9690344	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018601	chr7:19272360-20008881	Enhancers Transcr. at gene 5' and 3' Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	24 gene(s)	inside rSNPs	diseases
2	nsv1020275	chr7:19677535-19730557	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1033223	chr7:19682192-20461375	Enhancers Active TSS Flanking Active TSS Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
4	nsv538795	chr7:19682192-20461375	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
5	nsv524807	chr7:19714156-19803925	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region miRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:19717400-19720000	Weak transcription	K562	blood
2	chr7:19718000-19719400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr7:19718000-19720000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr7:19718200-19719200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links