Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11771348	0.90[EUR][1000 genomes]
rs12532153	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12534757	0.88[EUR][1000 genomes]
rs12536095	0.85[AMR][1000 genomes]
rs12536706	0.86[AMR][1000 genomes]
rs12536835	0.83[EUR][1000 genomes]
rs12667746	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12667862	0.91[EUR][1000 genomes]
rs3735617	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4591920	0.89[AFR][1000 genomes]
rs4620176	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59113291	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60527323	0.85[AMR][1000 genomes]
rs67568939	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67733453	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6962595	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72591413	0.90[EUR][1000 genomes]
rs72591414	0.85[EUR][1000 genomes]
rs72591424	0.81[ASN][1000 genomes]
rs72591425	0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72591428	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs72591431	0.83[EUR][1000 genomes]
rs7803245	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9690343	0.80[AFR][1000 genomes]
rs992934	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018865	chr5:74246293-74494552	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv882189	chr5:74356857-74478078	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv1016610	chr5:74403611-74627654	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:74427600-74434600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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