Variant report

Variant	rs4625273
Chromosome Location	chr1:155076043-155076044
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:155073800..155076765-chr1:155079525..155082285,4	MCF-7	breast:
2	chr1:155074516..155076079-chr1:155138849..155141341,2	MCF-7	breast:
3	chr1:155073240..155078254-chr1:155099466..155103660,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169242	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10796938	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10796939	0.90[ASN][1000 genomes]
rs10908454	1.00[ASN][1000 genomes]
rs10908455	1.00[ASN][1000 genomes]
rs10908456	1.00[ASN][1000 genomes]
rs11264312	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11264313	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11264314	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11264318	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11264319	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11264321	1.00[ASN][1000 genomes]
rs11264322	0.97[ASN][1000 genomes]
rs11264327	0.93[ASN][1000 genomes]
rs11264328	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11264329	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11581730	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11583762	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12026113	0.97[ASN][1000 genomes]
rs12039316	1.00[ASN][1000 genomes]
rs12040970	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12145362	0.93[ASN][1000 genomes]
rs1462855	1.00[ASN][1000 genomes]
rs1870939	0.81[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2306124	1.00[ASN][1000 genomes]
rs3766918	0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4303067	0.95[ASN][1000 genomes]
rs4361977	1.00[ASN][1000 genomes]
rs4845408	0.97[ASN][1000 genomes]
rs56112907	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57742792	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6427158	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6665822	0.93[ASN][1000 genomes]
rs6693477	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7364869	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7365544	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7366138	0.95[ASN][1000 genomes]
rs7366355	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7367207	1.00[ASN][1000 genomes]
rs7367758	0.97[ASN][1000 genomes]
rs7367897	1.00[ASN][1000 genomes]
rs7368345	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7534162	0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7546746	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7548955	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9330263	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
2	nsv872454	chr1:154904840-155079477	Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	181 gene(s)	inside rSNPs	diseases
3	esv1823746	chr1:154965207-155231904	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
4	nsv872455	chr1:155003954-155106550	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155074000-155076800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr1:155074400-155078800	Enhancers	Liver	Liver
3	chr1:155074400-155078800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr1:155074800-155077200	Weak transcription	Duodenum Mucosa	Duodenum
5	chr1:155074800-155079600	Enhancers	HepG2	liver
6	chr1:155075200-155077200	Weak transcription	Fetal Heart	heart
7	chr1:155075200-155077200	Weak transcription	K562	blood
8	chr1:155075200-155078000	Weak transcription	Placenta	Placenta
9	chr1:155075400-155076200	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr1:155075400-155077200	Weak transcription	Adipose Nuclei	Adipose
11	chr1:155075400-155077400	Weak transcription	Fetal Intestine Large	intestine
12	chr1:155075400-155078200	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr1:155075400-155080000	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr1:155076000-155076200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr1:155076000-155076200	Enhancers	Fetal Intestine Small	intestine
16	chr1:155076000-155078200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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