Variant report

Variant	rs7366138
Chromosome Location	chr1:155088350-155088351
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:155049589..155073019-chr1:155085330..155115362,149	MCF-7	breast:
2	chr1:155083403..155086848-chr1:155087073..155089537,3	MCF-7	breast:
3	chr1:155079725..155081338-chr1:155087375..155089361,2	MCF-7	breast:
4	chr1:155088071..155090711-chr1:155196886..155199315,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000143590	Chromatin interaction
ENSG00000160766	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10796938	0.95[ASN][1000 genomes]
rs10796939	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10908454	0.95[ASN][1000 genomes]
rs10908455	0.95[ASN][1000 genomes]
rs10908456	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11264312	0.95[ASN][1000 genomes]
rs11264313	0.93[ASN][1000 genomes]
rs11264314	0.95[ASN][1000 genomes]
rs11264319	0.95[ASN][1000 genomes]
rs11264321	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11264322	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11264323	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11264327	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11264328	0.98[ASN][1000 genomes]
rs11264329	0.98[ASN][1000 genomes]
rs11264333	0.82[EUR][1000 genomes]
rs11807418	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12026113	0.98[ASN][1000 genomes]
rs12039316	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12040970	0.98[ASN][1000 genomes]
rs12137164	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12145362	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12904	0.82[EUR][1000 genomes]
rs1462855	0.95[ASN][1000 genomes]
rs1870939	0.95[ASN][1000 genomes]
rs2306124	0.95[ASN][1000 genomes]
rs34815285	0.83[ASN][1000 genomes]
rs3766918	0.95[ASN][1000 genomes]
rs4303067	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4361977	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4625273	0.95[ASN][1000 genomes]
rs4845408	0.98[ASN][1000 genomes]
rs56112907	0.95[ASN][1000 genomes]
rs6427158	0.95[ASN][1000 genomes]
rs6665822	0.98[ASN][1000 genomes]
rs6693477	0.95[ASN][1000 genomes]
rs7364869	0.95[ASN][1000 genomes]
rs7365544	0.95[ASN][1000 genomes]
rs7366355	0.95[ASN][1000 genomes]
rs7367207	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7367758	0.98[ASN][1000 genomes]
rs7367897	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7368345	0.95[ASN][1000 genomes]
rs7534162	0.95[ASN][1000 genomes]
rs7548955	0.95[ASN][1000 genomes]
rs9297	0.82[EUR][1000 genomes]
rs9330263	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532579	chr1:154548165-155262692	Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	575 gene(s)	inside rSNPs	diseases
2	esv1823746	chr1:154965207-155231904	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	469 gene(s)	inside rSNPs	diseases
3	nsv872455	chr1:155003954-155106550	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	74 gene(s)	inside rSNPs	diseases
4	nsv998756	chr1:155080090-155136545	Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Strong transcription Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
5	nsv464084	chr1:155082298-155194980	Weak transcription Bivalent Enhancer Active TSS Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	366 gene(s)	inside rSNPs	diseases
6	nsv547961	chr1:155082298-155194980	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	366 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7366138	GBAP1	cis	Artery Tibial	GTEx

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:155078600-155090200	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr1:155078600-155098400	Weak transcription	Right Atrium	heart
3	chr1:155085000-155089400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:155085600-155088800	Weak transcription	Hela-S3	cervix
5	chr1:155086400-155089000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:155086400-155092600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:155087200-155088400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr1:155087400-155089400	Weak transcription	Lung	lung

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