Variant report

Variant	rs4625742
Chromosome Location	chr16:47089357-47089358
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:47071055..47073725-chr16:47087478..47089914,2	K562	blood:

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10459877	0.89[EUR][1000 genomes]
rs11247542	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11247543	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11649695	0.83[ASN][1000 genomes]
rs11859515	0.86[EUR][1000 genomes]
rs12445492	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12447719	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12596824	0.89[EUR][1000 genomes]
rs12597976	1.00[JPT][hapmap]
rs12925296	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1362406	1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs1376734	1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs1551188	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1894886	0.84[EUR][1000 genomes]
rs1978336	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2058673	1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs2341648	0.86[EUR][1000 genomes]
rs35405784	0.86[EUR][1000 genomes]
rs4246393	1.00[CHB][hapmap]
rs4577108	0.91[EUR][1000 genomes]
rs4966781	0.89[EUR][1000 genomes]
rs4966794	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4966795	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4966800	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4967664	0.86[EUR][1000 genomes]
rs4967696	1.00[CHB][hapmap];0.89[EUR][1000 genomes]
rs4967726	1.00[CHB][hapmap]
rs4967739	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62059134	0.90[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7189628	1.00[CHB][hapmap];0.86[EUR][1000 genomes]
rs7199379	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7199772	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7202325	0.89[EUR][1000 genomes]
rs7203206	0.89[EUR][1000 genomes]
rs8046142	0.86[EUR][1000 genomes]
rs8047353	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8052160	1.00[CHB][hapmap];0.84[EUR][1000 genomes]
rs8054039	1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs8058144	1.00[CHB][hapmap];0.82[EUR][1000 genomes]
rs8060193	1.00[CHB][hapmap];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9328700	0.83[ASN][1000 genomes]
rs933511	0.83[ASN][1000 genomes]
rs9745921	0.89[EUR][1000 genomes]
rs9925290	0.89[EUR][1000 genomes]
rs9927843	0.89[EUR][1000 genomes]
rs9939872	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059456	chr16:46463770-47307580	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
2	nsv1066115	chr16:46463770-47318415	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv1056328	chr16:47011193-47172862	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv1798659	chr16:47083332-47234379	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	esv1823679	chr16:47089357-47194051	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47072400-47096800	Weak transcription	Right Atrium	heart
2	chr16:47082800-47093800	Weak transcription	Spleen	Spleen
3	chr16:47087000-47093200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr16:47088200-47091400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr16:47089000-47091400	Enhancers	HepG2	liver

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