Variant report

Variant	rs4966795
Chromosome Location	chr16:47052691-47052692
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:47005161..47009239-chr16:47050620..47053908,8	MCF-7	breast:
2	chr16:47052300..47054787-chr16:48417459..48419848,2	K562	blood:
3	chr16:46981770..46982867-chr16:47051801..47052710,4	MCF-7	breast:
4	chr16:47051818..47053389-chr16:47054833..47056992,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000069345	Chromatin interaction
ENSG00000196470	Chromatin interaction
ENSG00000261173	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10459877	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11247542	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11247543	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11859515	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12445492	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12447719	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12596824	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12719759	0.85[EUR][1000 genomes]
rs12925296	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1362406	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1376734	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1551188	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1894886	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1978336	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2058673	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2341648	0.97[EUR][1000 genomes]
rs35405784	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4577108	0.97[EUR][1000 genomes]
rs4625742	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4966781	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4966794	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4966800	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4967664	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4967696	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4967724	0.83[EUR][1000 genomes]
rs4967739	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62059134	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7189628	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7199379	0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7199772	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7202325	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7203206	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8046142	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8047353	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8052160	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8054039	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8058144	0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8058714	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs8060193	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9745921	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9923192	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9925290	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9925525	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9927843	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059456	chr16:46463770-47307580	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
2	nsv1066115	chr16:46463770-47318415	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv1056328	chr16:47011193-47172862	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47048400-47067200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:47049600-47053000	Enhancers	Primary B cells from cord blood	blood
3	chr16:47050000-47053400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr16:47050200-47053000	Enhancers	Primary B cells from peripheral blood	blood
5	chr16:47050800-47063200	Weak transcription	Right Atrium	heart
6	chr16:47051200-47053600	Enhancers	GM12878-XiMat	blood
7	chr16:47051600-47052800	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
8	chr16:47051600-47053800	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr16:47052000-47052800	Enhancers	HepG2	liver
10	chr16:47052600-47053200	Enhancers	Monocytes-CD14+_RO01746	blood

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