Variant report

Variant	rs4629182
Chromosome Location	chr2:151076838-151076839
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:151074250..151076893-chr2:151342423..151344982,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000115963	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10170246	0.83[EUR][1000 genomes]
rs10179582	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10207680	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1031215	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10930038	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1155072	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11682154	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs11694747	0.82[EUR][1000 genomes]
rs12692644	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12986816	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12996112	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13024803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13028397	0.83[EUR][1000 genomes]
rs13430267	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4283445	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4295034	0.82[EUR][1000 genomes]
rs4318407	0.83[EUR][1000 genomes]
rs4434022	0.85[EUR][1000 genomes]
rs4435478	0.85[EUR][1000 genomes]
rs4461280	0.82[EUR][1000 genomes]
rs4464296	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4597552	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6432680	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7566441	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7569176	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7586530	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv995119	chr2:150556150-151294696	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv1001838	chr2:150819672-151745876	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
3	nsv535980	chr2:150819672-151745876	Enhancers Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	51 gene(s)	inside rSNPs	diseases
4	nsv469524	chr2:150927500-151076920	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv834412	chr2:151014270-151116638	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv2968	chr2:151076820-151089705	Weak transcription Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:151072000-151078800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr2:151073000-151078800	Weak transcription	Fetal Lung	lung
3	chr2:151073400-151078600	Weak transcription	Stomach Mucosa	stomach

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