Variant report

Variant	rs4629834
Chromosome Location	chr8:99857552-99857553
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11778269	1.00[CHD][hapmap]
rs7464632	1.00[CHD][hapmap]
rs7825755	1.00[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv891218	chr8:99507313-99906221	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1027025	chr8:99672977-100115315	Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv539690	chr8:99672977-100115315	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv891220	chr8:99681858-99867419	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv1031089	chr8:99715785-100399935	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs4629834	SLC22A23	trans	lymphoblastoid	seeQTL

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:99838800-99862800	Weak transcription	Ovary	ovary
2	chr8:99855800-99860400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr8:99856000-99860400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr8:99856800-99859000	Enhancers	Fetal Intestine Large	intestine
5	chr8:99857000-99858000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr8:99857000-99858600	Enhancers	Muscle Satellite Cultured Cells	--
7	chr8:99857000-99858600	Enhancers	Fetal Intestine Small	intestine
8	chr8:99857000-99858600	Enhancers	Placenta	Placenta
9	chr8:99857000-99860200	Enhancers	HMEC	breast
10	chr8:99857200-99857800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr8:99857200-99858000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr8:99857200-99859800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr8:99857400-99858000	Enhancers	NHEK	skin
14	chr8:99857400-99858200	Weak transcription	Placenta Amnion	Placenta Amnion

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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