Variant report

Variant	rs4632113
Chromosome Location	chr15:75119347-75119348
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:75074126..75076948-chr15:75116903..75120530,4	MCF-7	breast:
2	chr15:75117625..75119967-chr15:75247068..75249643,2	K562	blood:
3	chr15:75115096..75116793-chr15:75116936..75121281,3	K562	blood:
4	chr15:75115272..75120114-chr15:75130983..75135707,7	K562	blood:
5	chr15:75118890..75121057-chr15:75121173..75124170,2	K562	blood:
6	chr15:75096057..75099661-chr15:75118891..75121480,3	K562	blood:
7	chr15:75112798..75114870-chr15:75119173..75121348,2	K562	blood:
8	chr15:75116807..75119405-chr15:75229123..75231541,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000140506	Chromatin interaction
ENSG00000198794	Chromatin interaction
ENSG00000140474	Chromatin interaction
ENSG00000103653	Chromatin interaction
ENSG00000178741	Chromatin interaction
ENSG00000178718	Chromatin interaction
ENSG00000261606	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs16953877	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16953882	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1801014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34009660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34111182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35015218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35058771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35416465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35625871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35878711	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35896486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62621375	1.00[AMR][1000 genomes]
rs7168586	0.88[AFR][1000 genomes]
rs8040566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv520527	chr15:75108636-75122856	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75111400-75128000	Weak transcription	Gastric	stomach
2	chr15:75118000-75119400	Bivalent Enhancer	Brain Dorsolateral Prefrontal Cortex	brain
3	chr15:75118200-75119400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr15:75118200-75119600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr15:75118400-75119400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
6	chr15:75118400-75119600	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr15:75118400-75119600	Bivalent Enhancer	Fetal Stomach	stomach
8	chr15:75118600-75119400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
9	chr15:75118600-75119400	Bivalent Enhancer	Fetal Muscle Leg	muscle
10	chr15:75118600-75119400	Enhancers	Right Atrium	heart
11	chr15:75118600-75119600	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
12	chr15:75118600-75119600	Bivalent Enhancer	Primary B cells from peripheral blood	blood
13	chr15:75118600-75119600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
14	chr15:75118600-75119600	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
15	chr15:75118600-75119600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr15:75118600-75119600	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
17	chr15:75118600-75119600	Bivalent Enhancer	Fetal Brain Male	brain
18	chr15:75118600-75119600	Bivalent/Poised TSS	Fetal Brain Female	brain
19	chr15:75118600-75119600	Bivalent Enhancer	Fetal Intestine Large	intestine
20	chr15:75118600-75119600	Bivalent Enhancer	Placenta	Placenta
21	chr15:75118600-75119600	Enhancers	Pancreas	Pancrea
22	chr15:75118600-75119800	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr15:75118800-75119400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr15:75118800-75119600	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr15:75118800-75119800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
26	chr15:75119000-75119400	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
27	chr15:75119000-75119400	Bivalent Enhancer	Breast Myoepithelial Primary Cells	Breast
28	chr15:75119000-75119400	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
29	chr15:75119000-75119600	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
30	chr15:75119200-75119400	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
31	chr15:75119200-75119400	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr15:75119200-75119400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
33	chr15:75119200-75119400	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
34	chr15:75119200-75119400	Bivalent/Poised TSS	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr15:75119200-75119600	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
36	chr15:75119200-75119600	Bivalent Enhancer	Brain Germinal Matrix	brain
37	chr15:75119200-75119600	Bivalent Enhancer	Brain Hippocampus Middle	brain
38	chr15:75119200-75119800	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
39	chr15:75119200-75119800	Enhancers	Brain Anterior Caudate	brain
40	chr15:75119200-75123000	Weak transcription	Right Ventricle	heart
41	chr15:75119200-75123600	Weak transcription	Left Ventricle	heart
42	chr15:75119200-75125600	Weak transcription	Spleen	Spleen

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