Variant report

Variant	rs16953882
Chromosome Location	chr15:75096801-75096802
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75090844..75093273-chr15:75095406..75098069,2	K562	blood:
2	chr15:75094936..75097374-chr15:75098181..75101253,3	K562	blood:
3	chr15:75094317..75097312-chr15:75098901..75101095,6	MCF-7	breast:
4	chr15:75096057..75099661-chr15:75118891..75121480,3	K562	blood:

Variant related genes	Relation type
ENSG00000103653	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs16953877	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1801014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34009660	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34111182	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34755093	1.00[ASN][1000 genomes]
rs35015218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35058771	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35416465	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35625871	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35738366	1.00[ASN][1000 genomes]
rs35878711	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35896486	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4632113	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs62621375	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7168586	0.88[AFR][1000 genomes]
rs8028495	1.00[ASN][1000 genomes]
rs8040566	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75082400-75098400	Weak transcription	Fetal Kidney	kidney
2	chr15:75086000-75107400	Weak transcription	Fetal Brain Male	brain
3	chr15:75086200-75098000	Strong transcription	Fetal Stomach	stomach
4	chr15:75087200-75100200	Weak transcription	Right Atrium	heart
5	chr15:75089400-75097600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr15:75089800-75097200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:75090000-75097200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:75090000-75097600	Strong transcription	Thymus	Thymus
9	chr15:75090000-75097800	Strong transcription	Brain Germinal Matrix	brain
10	chr15:75090400-75097000	Strong transcription	Dnd41	blood
11	chr15:75090400-75097600	Strong transcription	Fetal Brain Female	brain
12	chr15:75090600-75097000	Strong transcription	Muscle Satellite Cultured Cells	--
13	chr15:75090600-75097600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr15:75091000-75097000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:75091200-75097600	Weak transcription	Psoas Muscle	Psoas
16	chr15:75091400-75097800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr15:75091800-75097800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr15:75092400-75097800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr15:75092600-75097000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr15:75092600-75097000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr15:75092600-75097000	Strong transcription	Brain Anterior Caudate	brain
22	chr15:75092600-75097000	Strong transcription	Brain Cingulate Gyrus	brain
23	chr15:75092600-75097200	Strong transcription	Lung	lung
24	chr15:75092600-75097200	Strong transcription	Osteobl	bone
25	chr15:75092600-75097400	Strong transcription	Primary T cells from cord blood	blood
26	chr15:75092600-75097600	Strong transcription	HUES6 Cell Line	embryonic stem cell
27	chr15:75092800-75097000	Strong transcription	Stomach Smooth Muscle	stomach
28	chr15:75092800-75097400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr15:75092800-75097600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr15:75092800-75097600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr15:75092800-75099000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr15:75093000-75097000	Strong transcription	Esophagus	oesophagus
33	chr15:75093000-75097000	Strong transcription	Skeletal Muscle Female	skeletal muscle
34	chr15:75093000-75097000	Strong transcription	NHEK	skin
35	chr15:75093000-75100400	Weak transcription	Stomach Mucosa	stomach
36	chr15:75093000-75100600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr15:75093200-75097000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr15:75093200-75097000	Strong transcription	Primary B cells from cord blood	blood
39	chr15:75093200-75097000	Strong transcription	Primary T helper cells PMA-I stimulated	--
40	chr15:75093200-75097000	Strong transcription	GM12878-XiMat	blood
41	chr15:75093200-75097400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
42	chr15:75093200-75097600	Strong transcription	Fetal Thymus	thymus
43	chr15:75093200-75098000	Strong transcription	Fetal Intestine Small	intestine
44	chr15:75093400-75097400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr15:75093400-75097600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr15:75093400-75097600	Strong transcription	Duodenum Mucosa	Duodenum
47	chr15:75093400-75097800	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr15:75093400-75097800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr15:75093400-75097800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr15:75093600-75097000	Strong transcription	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links