Variant report

Variant	rs35738366
Chromosome Location	chr15:75079141-75079142
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RELA	chr15:75078968-75083276	GM18951	blood:	n/a	chr15:75081431-75081440 chr15:75081431-75081440
2	ATF2	chr15:75078945-75081778	GM12878	blood:	n/a	chr15:75079326-75079340
3	POLR2A	chr15:75077574-75083240	GM19193	blood:	n/a	n/a
4	NFATC1	chr15:75079098-75082965	GM12878	blood:	n/a	n/a
5	POLR2A	chr15:75078871-75082774	GM12891	blood:	n/a	n/a
6	POLR2A	chr15:75078541-75083313	GM12892	blood:	n/a	n/a
7	POLR2A	chr15:75078876-75083272	GM12878	blood:	n/a	n/a
8	RELA	chr15:75078928-75083342	GM18505	blood:	n/a	chr15:75081431-75081440 chr15:75081431-75081440
9	POU2F2	chr15:75078933-75083247	GM12878	blood:	n/a	chr15:75081175-75081185 chr15:75081175-75081185 chr15:75081174-75081186 chr15:75081172-75081187 chr15:75081176-75081183 chr15:75081168-75081189 chr15:75081174-75081184 chr15:75081175-75081183 chr15:75081175-75081184 chr15:75081170-75081188 chr15:75081173-75081184
10	POLR2A	chr15:75078956-75083263	GM12892	blood:	n/a	n/a
11	POLR2A	chr15:75076731-75083396	GM12892	blood:	n/a	n/a
12	POLR2A	chr15:75072814-75083294	GM19099	blood:	n/a	n/a
13	POLR2A	chr15:75072482-75083351	GM12878	blood:	n/a	n/a
14	POLR2A	chr15:75078570-75083275	GM18505	blood:	n/a	n/a
15	BCLAF1	chr15:75078912-75083306	GM12878	blood:	n/a	chr15:75081349-75081362 chr15:75080342-75080351
16	MTA3	chr15:75078545-75083429	GM12878	blood:	n/a	n/a
17	POLR2A	chr15:75078927-75082956	Raji	blood:	n/a	n/a
18	EBF1	chr15:75078911-75082061	GM12878	blood:	n/a	chr15:75079866-75079877
19	POLR2A	chr15:75078866-75083275	HL-60	blood:	n/a	n/a
20	POLR2A	chr15:75078633-75084441	GM12878	blood:	n/a	n/a
21	POLR2A	chr15:75078568-75083245	GM18951	blood:	n/a	n/a
22	POLR2A	chr15:75078535-75083332	GM12878	blood:	n/a	n/a
23	POLR2A	chr15:75079059-75082632	GM12878	blood:	n/a	n/a
24	SPI1	chr15:75079102-75080952	HL-60	blood:	n/a	chr15:75080342-75080351 chr15:75080585-75080598
25	EBF1	chr15:75078636-75083487	GM12878	blood:	n/a	chr15:75079866-75079877
26	RELA	chr15:75079013-75083229	GM19193	blood:	n/a	chr15:75081431-75081440 chr15:75081431-75081440
27	POLR2A	chr15:75078653-75083265	GM12892	blood:	n/a	n/a
28	PML	chr15:75079006-75083365	GM12878	blood:	n/a	n/a
29	POLR2A	chr15:75078884-75079530	GM12878	blood:	n/a	n/a
30	RUNX3	chr15:75078886-75083379	GM12878	blood:	n/a	chr15:75083175-75083190
31	RUNX3	chr15:75078751-75082021	GM12878	blood:	n/a	n/a
32	ZNF263	chr15:75078914-75080581	HEK293-T-REx	kidney:	n/a	chr15:75079258-75079267 chr15:75079479-75079500
33	POLR2A	chr15:75078909-75082663	GM15510	blood:	n/a	n/a
34	POLR2A	chr15:75072699-75083327	GM12878	blood:	n/a	n/a
35	EP300	chr15:75079120-75082099	GM12878	blood:	n/a	chr15:75081110-75081117
36	RCOR1	chr15:75079117-75081767	GM12878	blood:	n/a	n/a
37	EBF1	chr15:75078868-75079368	GM12878	blood:	n/a	n/a
38	POLR2A	chr15:75078543-75083282	GM12891	blood:	n/a	n/a
39	ELF1	chr15:75079104-75081962	GM12878	blood:	n/a	chr15:75081109-75081120 chr15:75081109-75081120 chr15:75080344-75080357 chr15:75079925-75079938 chr15:75081110-75081119
40	MTA3	chr15:75078741-75083309	GM12878	blood:	n/a	n/a
41	POLR2A	chr15:75078534-75083223	GM12878	blood:	n/a	n/a
42	STAT5A	chr15:75077922-75083489	GM12878	blood:	n/a	chr15:75082120-75082129 chr15:75079426-75079438 chr15:75081561-75081573 chr15:75082897-75082904 chr15:75079521-75079528 chr15:75082119-75082128 chr15:75083308-75083315
43	POLR2A	chr15:75078544-75083303	GM12891	blood:	n/a	n/a
44	POLR2A	chr15:75075052-75083417	GM12891	blood:	n/a	n/a
45	POLR2A	chr15:75078572-75083320	GM12891	blood:	n/a	n/a
46	WRNIP1	chr15:75078637-75083179	GM12878	blood:	n/a	n/a
47	POLR2A	chr15:75078926-75083262	GM18526	blood:	n/a	n/a
48	NFATC1	chr15:75079085-75083138	GM12878	blood:	n/a	n/a
49	POLR2A	chr15:75078731-75083366	GM12892	blood:	n/a	n/a
50	STAT5A	chr15:75079057-75081877	GM12878	blood:	n/a	chr15:75079426-75079438 chr15:75081561-75081573 chr15:75079521-75079528

No.	Distal block	Cell Line	Cell type
1	chr15:75064340..75065920-chr15:75077718..75079828,2	MCF-7	breast:
2	chr15:75078437..75080336-chr15:75126473..75129418,2	MCF-7	breast:
3	chr15:75072512..75079183-chr15:75180576..75186728,11	MCF-7	breast:
4	chr15:75073170..75080511-chr15:75126432..75130376,7	MCF-7	breast:
5	chr15:75078025..75080593-chr15:75113459..75116440,2	K562	blood:
6	chr15:75078889..75080796-chr15:75108013..75111153,3	MCF-7	breast:
7	chr15:75078830..75080819-chr15:75135000..75137189,2	K562	blood:
8	chr15:75074156..75079604-chr15:75107384..75112501,9	MCF-7	breast:
9	chr15:74906678..74909061-chr15:75078128..75081929,4	MCF-7	breast:

Variant related genes	Relation type
CSK	TF binding region
ENSG00000178802	Chromatin interaction
ENSG00000179335	Chromatin interaction
ENSG00000260919	Chromatin interaction
ENSG00000140506	Chromatin interaction
ENSG00000140474	Chromatin interaction
ENSG00000261606	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11631682	0.90[AFR][1000 genomes]
rs11632822	0.90[AFR][1000 genomes]
rs11633539	1.00[AFR][1000 genomes]
rs16953877	1.00[ASN][1000 genomes]
rs16953882	1.00[ASN][1000 genomes]
rs17861149	1.00[EUR][1000 genomes]
rs1801014	1.00[ASN][1000 genomes]
rs2069521	0.85[AFR][1000 genomes]
rs2069524	0.85[AFR][1000 genomes]
rs34111182	1.00[ASN][1000 genomes]
rs34755093	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35058771	1.00[ASN][1000 genomes]
rs35416465	1.00[ASN][1000 genomes]
rs35603757	1.00[AFR][1000 genomes]
rs35878711	1.00[ASN][1000 genomes]
rs35896486	1.00[ASN][1000 genomes]
rs45486893	1.00[EUR][1000 genomes]
rs4646427	0.85[AFR][1000 genomes]
rs56748048	1.00[AFR][1000 genomes]
rs61671857	0.85[AFR][1000 genomes]
rs62621375	1.00[ASN][1000 genomes]
rs74025837	0.87[AFR][1000 genomes]
rs74025839	0.80[AFR][1000 genomes]
rs74025850	0.85[AFR][1000 genomes]
rs8028495	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040566	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75075600-75080800	Enhancers	Fetal Heart	heart
2	chr15:75075600-75083400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
3	chr15:75075800-75079600	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
4	chr15:75075800-75082000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
5	chr15:75076000-75079800	Flanking Active TSS	Primary T cells from cord blood	blood
6	chr15:75076000-75080400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr15:75076000-75080600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr15:75076000-75080800	Enhancers	Fetal Brain Male	brain
9	chr15:75076200-75079400	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
10	chr15:75076200-75080000	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr15:75076200-75080000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
12	chr15:75076200-75080000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr15:75076200-75080200	Enhancers	Psoas Muscle	Psoas
14	chr15:75076200-75080200	Enhancers	Stomach Mucosa	stomach
15	chr15:75076400-75079200	Weak transcription	A549	lung
16	chr15:75076400-75079800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr15:75076400-75079800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr15:75076400-75080000	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr15:75076400-75080000	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr15:75076400-75082200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
21	chr15:75076400-75083200	Enhancers	Colon Smooth Muscle	Colon
22	chr15:75076400-75083400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
23	chr15:75076400-75083400	Genic enhancers	Fetal Stomach	stomach
24	chr15:75076400-75083400	Enhancers	Right Ventricle	heart
25	chr15:75076400-75084200	Enhancers	Spleen	Spleen
26	chr15:75076400-75085800	Enhancers	Left Ventricle	heart
27	chr15:75076600-75079200	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr15:75076600-75079800	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
29	chr15:75076600-75080400	Enhancers	Brain Germinal Matrix	brain
30	chr15:75076600-75080800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr15:75076600-75080800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr15:75076600-75081000	Genic enhancers	Fetal Intestine Large	intestine
33	chr15:75076600-75082400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr15:75076600-75082600	Genic enhancers	NHEK	skin
35	chr15:75076600-75082800	Genic enhancers	Fetal Muscle Trunk	muscle
36	chr15:75076600-75083400	Enhancers	Right Atrium	heart
37	chr15:75076600-75083400	Enhancers	HMEC	breast
38	chr15:75076600-75084800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr15:75076800-75079200	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
40	chr15:75076800-75079400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr15:75076800-75080000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr15:75076800-75081600	Genic enhancers	Fetal Intestine Small	intestine
43	chr15:75076800-75083200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr15:75077000-75079400	Transcr. at gene 5' and 3'	Primary Natural Killer cells fromperipheralblood	blood
45	chr15:75077200-75081000	Genic enhancers	K562	blood
46	chr15:75077200-75082200	Genic enhancers	Fetal Muscle Leg	muscle
47	chr15:75077400-75079800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
48	chr15:75077600-75079400	Transcr. at gene 5' and 3'	Primary mononuclear cells fromperipheralblood	Blood
49	chr15:75077600-75081800	Genic enhancers	Lung	lung
50	chr15:75077600-75083000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood

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