Variant report

Variant	rs4646427
Chromosome Location	chr15:75045692-75045693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:75037842..75040616-chr15:75043779..75046442,3	K562	blood:
2	chr15:74932436..74935063-chr15:75043587..75046477,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs11553762	0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11631294	0.88[ASN][1000 genomes]
rs11631682	1.00[ASW][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11631689	0.93[ASN][1000 genomes]
rs11631817	0.85[ASN][1000 genomes]
rs11632547	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632706	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11632814	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11632822	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11633539	0.82[ASW][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11633861	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11636256	0.93[ASN][1000 genomes]
rs11637637	0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16970078	0.82[ASW][hapmap];0.82[YRI][hapmap]
rs16970170	0.82[ASW][hapmap];0.91[YRI][hapmap]
rs16972511	0.82[ASW][hapmap];0.86[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[ASN][1000 genomes]
rs16972853	0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16973048	0.89[YRI][hapmap]
rs17861124	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17861125	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17861130	0.95[ASN][1000 genomes]
rs17861135	0.88[AFR][1000 genomes]
rs17861138	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17861139	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17861141	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17861142	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17861145	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2069519	1.00[ASW][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2069521	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2069522	1.00[ASW][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2069524	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2069525	1.00[ASW][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2069526	1.00[ASW][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.84[YRI][hapmap];0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35197434	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35331038	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35408600	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs35603757	0.85[AFR][1000 genomes]
rs35738366	0.85[AFR][1000 genomes]
rs4646425	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56066141	0.93[ASN][1000 genomes]
rs56748048	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59902765	0.85[ASN][1000 genomes]
rs74025837	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74025839	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74025842	0.93[ASN][1000 genomes]
rs74025843	0.93[ASN][1000 genomes]
rs74025847	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75043400-75045800	Enhancers	Placenta	Placenta
2	chr15:75043600-75046000	Enhancers	Placenta Amnion	Placenta Amnion
3	chr15:75043800-75051200	Weak transcription	HepG2	liver
4	chr15:75044600-75045800	Enhancers	HSMMtube	muscle
5	chr15:75044800-75047000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr15:75044800-75062600	Weak transcription	Right Atrium	heart
7	chr15:75045400-75047600	Strong transcription	Liver	Liver
8	chr15:75045600-75046800	Weak transcription	Fetal Kidney	kidney
9	chr15:75045600-75047200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr15:75045600-75047200	Weak transcription	Lung	lung
11	chr15:75045600-75053600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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