Variant report

Variant	rs4646425
Chromosome Location	chr15:75043281-75043282
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:75043196..75045391-chr15:75075402..75077625,2	K562	blood:
2	chr15:75016987..75018978-chr15:75041857..75043748,2	K562	blood:
3	chr15:74929455..74931233-chr15:75042400..75045089,2	K562	blood:
4	chr15:75008936..75010510-chr15:75042594..75044929,2	K562	blood:
5	chr15:75041437..75045142-chr15:75051536..75054125,3	K562	blood:
6	chr15:74692122..74694908-chr15:75042020..75043632,2	K562	blood:
7	chr15:75035073..75037761-chr15:75042329..75044643,2	MCF-7	breast:
8	chr15:74918395..74921353-chr15:75041999..75044301,2	MCF-7	breast:
9	chr15:75042997..75044715-chr15:75054154..75056433,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000140465	Chromatin interaction
ENSG00000179335	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11553762	0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11631294	0.88[ASN][1000 genomes]
rs11631682	1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.85[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11631689	0.93[ASN][1000 genomes]
rs11631817	0.85[ASN][1000 genomes]
rs11632547	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632706	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11632814	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11632822	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11633539	0.86[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11633861	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11636256	0.93[ASN][1000 genomes]
rs11637637	0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16972511	0.86[CHB][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.93[ASN][1000 genomes]
rs16972853	0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17861124	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17861125	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17861130	0.95[ASN][1000 genomes]
rs17861138	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17861139	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17861141	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17861142	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17861145	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2069519	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2069521	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2069522	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2069524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2069525	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2069526	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35197434	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35331038	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35408600	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4646427	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56066141	0.93[ASN][1000 genomes]
rs56748048	0.91[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs59902765	0.85[ASN][1000 genomes]
rs74025837	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74025839	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74025842	0.93[ASN][1000 genomes]
rs74025843	0.93[ASN][1000 genomes]
rs74025847	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75040600-75044600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:75041200-75044400	Flanking Active TSS	Liver	Liver
3	chr15:75041600-75044800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:75042400-75043800	Enhancers	HepG2	liver
5	chr15:75042400-75044600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr15:75042600-75043600	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr15:75042600-75043800	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr15:75042800-75043400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr15:75042800-75043600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr15:75042800-75043800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:75043000-75043600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
12	chr15:75043200-75043400	Bivalent Enhancer	Stomach Smooth Muscle	stomach
13	chr15:75043200-75043800	Enhancers	HUES6 Cell Line	embryonic stem cell

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