Variant report

Variant	rs11553762
Chromosome Location	chr15:75094881-75094882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75090885..75095958-chr15:75228068..75231576,5	K562	blood:
2	chr15:75090919..75095080-chr15:75105772..75108722,6	MCF-7	breast:
3	chr15:75094317..75097312-chr15:75098901..75101095,6	MCF-7	breast:
4	chr15:75093545..75095294-chr15:75111184..75112969,2	K562	blood:
5	chr15:75079725..75083728-chr15:75089989..75095483,10	MCF-7	breast:
6	chr15:75094337..75095958-chr15:75228176..75229862,2	K562	blood:

Variant related genes	Relation type
ENSG00000264386	Chromatin interaction
ENSG00000140506	Chromatin interaction
ENSG00000103653	Chromatin interaction
ENSG00000261606	Chromatin interaction
ENSG00000178741	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10851874	0.84[AMR][1000 genomes]
rs11631294	0.92[ASN][1000 genomes]
rs11631682	1.00[CHD][hapmap];1.00[JPT][hapmap];0.85[TSI][hapmap];0.87[ASN][1000 genomes]
rs11631689	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11631817	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632547	0.85[ASN][1000 genomes]
rs11632706	0.83[ASN][1000 genomes]
rs11632814	0.83[ASN][1000 genomes]
rs11632822	0.87[ASN][1000 genomes]
rs11633539	0.85[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11633861	0.83[ASN][1000 genomes]
rs11636256	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11637637	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11637900	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12720461	1.00[MKK][hapmap]
rs16972511	0.85[CHB][hapmap];0.81[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs16972853	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16973078	1.00[ASW][hapmap];0.82[CHB][hapmap];0.85[CHD][hapmap];1.00[MKK][hapmap];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17861099	1.00[AFR][1000 genomes]
rs17861124	0.83[ASN][1000 genomes]
rs17861125	0.83[ASN][1000 genomes]
rs17861130	0.80[ASN][1000 genomes]
rs17861138	0.83[ASN][1000 genomes]
rs17861139	0.83[ASN][1000 genomes]
rs17861141	0.81[ASN][1000 genomes]
rs17861142	0.83[ASN][1000 genomes]
rs17861145	0.83[ASN][1000 genomes]
rs2069519	0.81[CHD][hapmap];0.83[ASN][1000 genomes]
rs2069521	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs2069522	0.81[CHD][hapmap];0.83[ASN][1000 genomes]
rs2069524	0.83[ASN][1000 genomes]
rs2069525	0.81[CHD][hapmap];0.83[ASN][1000 genomes]
rs2069526	0.81[CHD][hapmap];0.83[ASN][1000 genomes]
rs35197434	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35331038	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35408600	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4646425	0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs4646427	0.93[CHD][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs56066141	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56288642	1.00[AFR][1000 genomes]
rs56748048	0.87[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59902765	1.00[ASN][1000 genomes]
rs61166890	0.84[AMR][1000 genomes]
rs61364523	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs74025837	0.87[ASN][1000 genomes]
rs74025839	0.87[ASN][1000 genomes]
rs74025842	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74025843	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs74025847	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs873192	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75082400-75098400	Weak transcription	Fetal Kidney	kidney
2	chr15:75086000-75107400	Weak transcription	Fetal Brain Male	brain
3	chr15:75086200-75098000	Strong transcription	Fetal Stomach	stomach
4	chr15:75087200-75100200	Weak transcription	Right Atrium	heart
5	chr15:75089400-75097600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr15:75089800-75097200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr15:75090000-75097200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr15:75090000-75097600	Strong transcription	Thymus	Thymus
9	chr15:75090000-75097800	Strong transcription	Brain Germinal Matrix	brain
10	chr15:75090200-75096800	Strong transcription	Cortex derived primary cultured neurospheres	brain
11	chr15:75090400-75096600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr15:75090400-75096600	Strong transcription	Placenta Amnion	Placenta Amnion
13	chr15:75090400-75096800	Strong transcription	Rectal Smooth Muscle	rectum
14	chr15:75090400-75097000	Strong transcription	Dnd41	blood
15	chr15:75090400-75097600	Strong transcription	Fetal Brain Female	brain
16	chr15:75090600-75095000	Strong transcription	Fetal Lung	lung
17	chr15:75090600-75097000	Strong transcription	Muscle Satellite Cultured Cells	--
18	chr15:75090600-75097600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr15:75090800-75096800	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr15:75091000-75097000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr15:75091200-75097600	Weak transcription	Psoas Muscle	Psoas
22	chr15:75091400-75097800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr15:75091800-75097800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr15:75092000-75095800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
25	chr15:75092000-75096600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr15:75092400-75097800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr15:75092600-75096000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
28	chr15:75092600-75096600	Strong transcription	Gastric	stomach
29	chr15:75092600-75096800	Strong transcription	H9 Cell Line	embryonic stem cell
30	chr15:75092600-75096800	Strong transcription	Brain Angular Gyrus	brain
31	chr15:75092600-75096800	Strong transcription	Brain Inferior Temporal Lobe	brain
32	chr15:75092600-75096800	Strong transcription	Brain Substantia Nigra	brain
33	chr15:75092600-75096800	Strong transcription	NHLF	lung
34	chr15:75092600-75097000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr15:75092600-75097000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr15:75092600-75097000	Strong transcription	Brain Anterior Caudate	brain
37	chr15:75092600-75097000	Strong transcription	Brain Cingulate Gyrus	brain
38	chr15:75092600-75097200	Strong transcription	Lung	lung
39	chr15:75092600-75097200	Strong transcription	Osteobl	bone
40	chr15:75092600-75097400	Strong transcription	Primary T cells from cord blood	blood
41	chr15:75092600-75097600	Strong transcription	HUES6 Cell Line	embryonic stem cell
42	chr15:75092800-75096200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr15:75092800-75096800	Strong transcription	Pancreas	Pancrea
44	chr15:75092800-75096800	Strong transcription	Sigmoid Colon	Sigmoid Colon
45	chr15:75092800-75097000	Strong transcription	Stomach Smooth Muscle	stomach
46	chr15:75092800-75097400	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr15:75092800-75097600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr15:75092800-75097600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr15:75092800-75099000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
50	chr15:75093000-75095000	Strong transcription	NHDF-Ad	bronchial

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