Variant report

Variant	rs873192
Chromosome Location	chr15:75137004-75137005
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:8)
CpG islands
(count:0)
Chromatin interactive
region (count:24)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:8 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:75136909-75137114	GM12878	blood:	n/a	n/a
2	POLR2A	chr15:75136135-75137056	K562	blood:	n/a	n/a
3	MXI1	chr15:75134338-75137403	SK-N-SH	brain:	n/a	chr15:75135661-75135670 chr15:75135663-75135672
4	POLR2A	chr15:75134803-75137136	PANC-1	pancreas:	n/a	n/a
5	POLR2A	chr15:75134970-75137245	GM12892	blood:	n/a	n/a
6	POLR2A	chr15:75136788-75137265	GM12891	blood:	n/a	n/a
7	POLR2A	chr15:75136942-75137189	K562	blood:	n/a	n/a
8	POLR2A	chr15:75134933-75137369	GM12892	blood:	n/a	n/a

No data

(count:24 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:75079215..75085047-chr15:75133215..75137478,7	MCF-7	breast:
2	chr15:74906653..74908395-chr15:75135147..75137390,2	K562	blood:
3	chr15:74906299..74909390-chr15:75133726..75137690,7	MCF-7	breast:
4	chr15:75135788..75137937-chr15:75174373..75175874,2	MCF-7	breast:
5	chr15:75118538..75120714-chr15:75135771..75139266,4	K562	blood:
6	chr15:75052835..75054344-chr15:75136259..75138062,2	K562	blood:
7	chr15:75105168..75109047-chr15:75134120..75137766,4	K562	blood:
8	chr15:75072228..75074857-chr15:75134119..75137193,5	K562	blood:
9	chr15:75135715..75138276-chr15:75139819..75143025,6	K562	blood:
10	chr15:75135427..75140750-chr15:75141950..75147054,10	K562	blood:
11	chr15:75135967..75138215-chr15:75196939..75199387,3	K562	blood:
12	chr15:75090900..75093717-chr15:75134239..75137508,3	MCF-7	breast:
13	chr15:75133950..75137156-chr15:75180779..75184661,9	MCF-7	breast:
14	chr15:75135797..75138668-chr15:75143176..75146551,4	K562	blood:
15	chr15:75073376..75079113-chr15:75130007..75137097,15	MCF-7	breast:
16	chr15:75133790..75137554-chr15:75195204..75200578,14	MCF-7	breast:
17	chr15:75132595..75137581-chr15:75190842..75194074,4	K562	blood:
18	chr15:75134049..75139648-chr15:75161531..75167020,13	MCF-7	breast:
19	chr15:75136180..75138079-chr15:75161900..75164141,2	K562	blood:
20	chr15:75131329..75142649-chr15:75180088..75200119,60	MCF-7	breast:
21	chr15:75134794..75137581-chr15:75190842..75193156,3	K562	blood:
22	chr15:75135336..75137971-chr15:75192308..75194100,2	MCF-7	breast:
23	chr15:75131716..75139878-chr15:75227772..75233177,11	MCF-7	breast:
24	chr15:75072623..75074857-chr15:75134348..75137142,2	K562	blood:

No data

Variant related genes	Relation type
ULK3	TF binding region
ENSG00000260919	Chromatin interaction
ENSG00000178802	Chromatin interaction
ENSG00000178761	Chromatin interaction
ENSG00000260824	Chromatin interaction
ENSG00000140506	Chromatin interaction
ENSG00000261606	Chromatin interaction
ENSG00000213578	Chromatin interaction
ENSG00000103653	Chromatin interaction
ENSG00000178741	Chromatin interaction
ENSG00000264386	Chromatin interaction
ENSG00000140497	Chromatin interaction
ENSG00000179335	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11553762	0.87[ASN][1000 genomes]
rs11631294	0.80[ASN][1000 genomes]
rs11631817	0.87[ASN][1000 genomes]
rs11637637	0.87[ASN][1000 genomes]
rs16972853	0.87[ASN][1000 genomes]
rs16973078	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35408600	0.82[ASN][1000 genomes]
rs59902765	0.87[ASN][1000 genomes]
rs61364523	1.00[AFR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	nsv904382	chr15:75129594-75140854	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv569992	chr15:75132319-75137868	Genic enhancers Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75135800-75138200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
2	chr15:75135800-75138200	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
3	chr15:75135800-75139800	Weak transcription	Small Intestine	intestine
4	chr15:75136000-75137200	Enhancers	Esophagus	oesophagus
5	chr15:75136000-75137800	Weak transcription	Aorta	Aorta
6	chr15:75136200-75137200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr15:75136200-75137200	Weak transcription	Fetal Brain Female	brain
8	chr15:75136200-75137400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
9	chr15:75136200-75137600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:75136200-75137600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
11	chr15:75136200-75138200	Genic enhancers	Fetal Thymus	thymus
12	chr15:75136200-75139600	Weak transcription	Stomach Mucosa	stomach
13	chr15:75136200-75140000	Weak transcription	Ovary	ovary
14	chr15:75136200-75144200	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr15:75136200-75155800	Weak transcription	NH-A	brain
16	chr15:75136200-75160000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr15:75136200-75161800	Weak transcription	Fetal Kidney	kidney
18	chr15:75136400-75137200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
19	chr15:75136400-75137200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr15:75136400-75137200	Weak transcription	Brain Substantia Nigra	brain
21	chr15:75136400-75137200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr15:75136400-75137400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr15:75136400-75137400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr15:75136400-75137400	Weak transcription	Brain Hippocampus Middle	brain
25	chr15:75136400-75137400	Weak transcription	Pancreas	Pancrea
26	chr15:75136400-75137600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr15:75136400-75137800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:75136400-75137800	Genic enhancers	Fetal Muscle Trunk	muscle
29	chr15:75136400-75137800	Genic enhancers	Fetal Muscle Leg	muscle
30	chr15:75136400-75138200	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr15:75136400-75138200	Genic enhancers	Spleen	Spleen
32	chr15:75136400-75138200	Strong transcription	NHLF	lung
33	chr15:75136400-75138400	Enhancers	Primary hematopoietic stem cells	blood
34	chr15:75136400-75138800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr15:75136400-75139200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr15:75136400-75139600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr15:75136400-75139800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr15:75136400-75139800	Weak transcription	Rectal Smooth Muscle	rectum
39	chr15:75136400-75139800	Weak transcription	Right Atrium	heart
40	chr15:75136400-75139800	Weak transcription	HMEC	breast
41	chr15:75136400-75139800	Weak transcription	Osteobl	bone
42	chr15:75136400-75140000	Weak transcription	Psoas Muscle	Psoas
43	chr15:75136400-75142000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr15:75136400-75142800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
45	chr15:75136400-75145400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
46	chr15:75136400-75147200	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr15:75136400-75149400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
48	chr15:75136400-75158000	Weak transcription	NHDF-Ad	bronchial
49	chr15:75136600-75137200	Enhancers	Primary T helper cells PMA-I stimulated	--
50	chr15:75136600-75137200	Enhancers	Primary T helper cells fromperipheralblood	blood

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