Variant report

Variant	rs35408600
Chromosome Location	chr15:75084435-75084436
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:15)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:15 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:75084430-75084934	GM12891	blood:	n/a	n/a
2	POLR2A	chr15:75084158-75084875	GM12878	blood:	n/a	n/a
3	POLR2A	chr15:75084432-75084875	GM12878	blood:	n/a	n/a
4	POLR2A	chr15:75084011-75085787	GM12892	blood:	n/a	n/a
5	POLR2A	chr15:75084261-75085755	GM12878	blood:	n/a	n/a
6	POLR2A	chr15:75083936-75087476	GM12878	blood:	n/a	n/a
7	POLR2A	chr15:75078633-75084441	GM12878	blood:	n/a	n/a
8	POLR2A	chr15:75084072-75085432	HL-60	blood:	n/a	n/a
9	POLR2A	chr15:75084297-75084481	HUVEC	blood vessel:	n/a	n/a
10	POLR2A	chr15:75084364-75086015	GM12892	blood:	n/a	n/a
11	POLR2A	chr15:75084074-75086357	GM12878	blood:	n/a	n/a
12	MTA3	chr15:75083980-75086348	GM12878	blood:	n/a	n/a
13	MTA3	chr15:75084398-75085208	GM12878	blood:	n/a	n/a
14	POLR2A	chr15:75083995-75086054	GM12892	blood:	n/a	n/a
15	WRNIP1	chr15:75084037-75086173	GM12878	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:75080218..75087203-chr15:75106250..75113071,13	MCF-7	breast:
2	chr15:75081397..75085815-chr15:75182279..75185381,4	MCF-7	breast:
3	chr15:75079215..75085047-chr15:75133215..75137478,7	MCF-7	breast:
4	chr15:75081235..75085402-chr15:75108223..75111318,4	MCF-7	breast:
5	chr15:75082759..75085102-chr15:75229620..75232231,2	K562	blood:

No data

Variant related genes	Relation type
CSK	TF binding region
MIR4513	TF binding region
ENSG00000261606	Chromatin interaction
ENSG00000140474	Chromatin interaction
ENSG00000140506	Chromatin interaction
ENSG00000178802	Chromatin interaction
ENSG00000178741	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11553762	0.87[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11631294	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11631682	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11631689	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11631817	0.95[ASN][1000 genomes]
rs11632547	0.90[ASN][1000 genomes]
rs11632706	0.88[ASN][1000 genomes]
rs11632814	0.88[ASN][1000 genomes]
rs11632822	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11633539	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11633861	0.88[ASN][1000 genomes]
rs11636256	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11637637	0.95[ASN][1000 genomes]
rs16972511	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16972853	0.95[ASN][1000 genomes]
rs16973078	0.85[ASN][1000 genomes]
rs17861124	0.88[ASN][1000 genomes]
rs17861125	0.88[ASN][1000 genomes]
rs17861130	0.85[ASN][1000 genomes]
rs17861138	0.88[ASN][1000 genomes]
rs17861139	0.88[ASN][1000 genomes]
rs17861141	0.86[ASN][1000 genomes]
rs17861142	0.88[ASN][1000 genomes]
rs17861145	0.88[ASN][1000 genomes]
rs2069519	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2069521	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs2069522	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2069524	0.91[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2069525	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2069526	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs35197434	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35331038	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4646425	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4646427	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs56066141	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56748048	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59902765	0.95[ASN][1000 genomes]
rs61364523	0.80[ASN][1000 genomes]
rs74025837	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74025839	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs74025842	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74025843	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs74025847	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs873192	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75076400-75085800	Enhancers	Left Ventricle	heart
2	chr15:75076600-75084800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr15:75077800-75092000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr15:75078000-75085600	Enhancers	NHDF-Ad	bronchial
5	chr15:75078600-75085000	Enhancers	NHLF	lung
6	chr15:75078800-75084600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr15:75079400-75093800	Weak transcription	Aorta	Aorta
8	chr15:75080200-75084600	Weak transcription	Psoas Muscle	Psoas
9	chr15:75080800-75086000	Enhancers	Adipose Nuclei	Adipose
10	chr15:75080800-75088600	Enhancers	Stomach Mucosa	stomach
11	chr15:75081200-75085000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:75081200-75091400	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr15:75081800-75087600	Enhancers	Brain Substantia Nigra	brain
14	chr15:75081800-75092000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr15:75081800-75092000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr15:75082000-75085600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr15:75082200-75085800	Weak transcription	HUES48 Cell Line	embryonic stem cell
18	chr15:75082200-75092200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr15:75082400-75085800	Enhancers	Liver	Liver
20	chr15:75082400-75088000	Genic enhancers	Fetal Intestine Small	intestine
21	chr15:75082400-75098400	Weak transcription	Fetal Kidney	kidney
22	chr15:75082600-75085600	Enhancers	Fetal Heart	heart
23	chr15:75082600-75086000	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr15:75082600-75088400	Genic enhancers	Fetal Thymus	thymus
25	chr15:75082600-75090400	Weak transcription	HepG2	liver
26	chr15:75082600-75093200	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr15:75082800-75084600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr15:75082800-75084600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
29	chr15:75082800-75084800	Weak transcription	Fetal Brain Male	brain
30	chr15:75082800-75085000	Weak transcription	Ovary	ovary
31	chr15:75082800-75086000	Enhancers	Rectal Mucosa Donor 31	rectum
32	chr15:75082800-75086000	Enhancers	Skeletal Muscle Female	skeletal muscle
33	chr15:75082800-75086800	Weak transcription	Brain Germinal Matrix	brain
34	chr15:75083000-75085000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr15:75083000-75085600	Weak transcription	Rectal Smooth Muscle	rectum
36	chr15:75083000-75086000	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr15:75083000-75086200	Enhancers	Osteobl	bone
38	chr15:75083000-75087200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr15:75083000-75089800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr15:75083000-75090400	Weak transcription	Dnd41	blood
41	chr15:75083000-75092000	Weak transcription	Hela-S3	cervix
42	chr15:75083000-75093000	Weak transcription	HUVEC	blood vessel
43	chr15:75083200-75084600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr15:75083200-75085200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr15:75083200-75085200	Weak transcription	HUES6 Cell Line	embryonic stem cell
46	chr15:75083200-75085400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr15:75083200-75085400	Genic enhancers	Primary B cells from peripheral blood	blood
48	chr15:75083200-75085400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
49	chr15:75083200-75086200	Enhancers	Brain Hippocampus Middle	brain
50	chr15:75083200-75086400	Enhancers	NH-A	brain

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