Variant report

Variant	rs11631817
Chromosome Location	chr15:75114567-75114568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75074174..75075858-chr15:75112738..75114767,2	MCF-7	breast:
2	chr15:75074461..75076806-chr15:75112062..75114585,2	K562	blood:
3	chr15:75113859..75115829-chr15:75135120..75137203,2	MCF-7	breast:
4	chr15:75112517..75114870-chr15:75115640..75117170,2	MCF-7	breast:
5	chr15:75113543..75115731-chr15:75122217..75124290,2	K562	blood:
6	chr15:75108017..75109912-chr15:75114230..75116710,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140474	Chromatin interaction
ENSG00000140506	Chromatin interaction
ENSG00000261606	Chromatin interaction
ENSG00000103653	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10851874	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11553762	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11631294	0.92[ASN][1000 genomes]
rs11631682	0.87[ASN][1000 genomes]
rs11631689	0.87[ASN][1000 genomes]
rs11632547	0.85[ASN][1000 genomes]
rs11632706	0.83[ASN][1000 genomes]
rs11632814	0.83[ASN][1000 genomes]
rs11632822	0.87[ASN][1000 genomes]
rs11633539	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11633861	0.83[ASN][1000 genomes]
rs11636256	0.87[ASN][1000 genomes]
rs11637637	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11637900	0.81[AMR][1000 genomes]
rs16972511	0.87[ASN][1000 genomes]
rs16972853	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16973078	0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17861124	0.83[ASN][1000 genomes]
rs17861125	0.83[ASN][1000 genomes]
rs17861130	0.80[ASN][1000 genomes]
rs17861138	0.83[ASN][1000 genomes]
rs17861139	0.83[ASN][1000 genomes]
rs17861141	0.81[ASN][1000 genomes]
rs17861142	0.83[ASN][1000 genomes]
rs17861145	0.83[ASN][1000 genomes]
rs2069519	0.83[ASN][1000 genomes]
rs2069521	0.85[ASN][1000 genomes]
rs2069522	0.83[ASN][1000 genomes]
rs2069524	0.83[ASN][1000 genomes]
rs2069525	0.83[ASN][1000 genomes]
rs2069526	0.83[ASN][1000 genomes]
rs35197434	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35331038	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35408600	0.95[ASN][1000 genomes]
rs4646425	0.85[ASN][1000 genomes]
rs4646427	0.85[ASN][1000 genomes]
rs56066141	0.87[ASN][1000 genomes]
rs56748048	0.90[ASN][1000 genomes]
rs59902765	1.00[ASN][1000 genomes]
rs61166890	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61364523	0.91[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs74025837	0.87[ASN][1000 genomes]
rs74025839	0.87[ASN][1000 genomes]
rs74025842	0.87[ASN][1000 genomes]
rs74025843	0.87[ASN][1000 genomes]
rs74025847	0.87[ASN][1000 genomes]
rs873192	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv520527	chr15:75108636-75122856	Enhancers Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	nsv904381	chr15:75108636-75242155	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75109800-75116800	Weak transcription	Brain Anterior Caudate	brain
2	chr15:75110800-75115000	Enhancers	Primary B cells from peripheral blood	blood
3	chr15:75111400-75128000	Weak transcription	Gastric	stomach
4	chr15:75112400-75114800	Enhancers	Fetal Brain Male	brain
5	chr15:75113000-75115000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr15:75113400-75114600	Enhancers	Spleen	Spleen
7	chr15:75113600-75118600	Weak transcription	Right Atrium	heart
8	chr15:75113800-75115200	Weak transcription	Duodenum Mucosa	Duodenum
9	chr15:75114000-75114800	Enhancers	Fetal Brain Female	brain
10	chr15:75114000-75115000	Enhancers	Brain Germinal Matrix	brain
11	chr15:75114400-75118200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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