Variant report

Variant	rs10851874
Chromosome Location	chr15:75099283-75099284
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75094317..75097312-chr15:75098901..75101095,6	MCF-7	breast:
2	chr15:75094936..75096748-chr15:75098181..75100444,2	K562	blood:
3	chr15:75094936..75097374-chr15:75098181..75101253,3	K562	blood:
4	chr15:75080438..75082798-chr15:75099156..75102028,3	K562	blood:
5	chr15:75092977..75094886-chr15:75098316..75100424,2	K562	blood:
6	chr15:75096057..75099661-chr15:75118891..75121480,3	K562	blood:
7	chr15:75090435..75094394-chr15:75099172..75101373,3	K562	blood:

Variant related genes	Relation type
ENSG00000264386	Chromatin interaction
ENSG00000103653	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11553760	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11553762	0.84[AMR][1000 genomes]
rs11631817	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11637637	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs16972853	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2229729	0.86[AFR][1000 genomes]
rs61166890	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75086000-75107400	Weak transcription	Fetal Brain Male	brain
2	chr15:75087200-75100200	Weak transcription	Right Atrium	heart
3	chr15:75093000-75100400	Weak transcription	Stomach Mucosa	stomach
4	chr15:75093000-75100600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr15:75094600-75099400	Weak transcription	Small Intestine	intestine
6	chr15:75094600-75100400	Weak transcription	HepG2	liver
7	chr15:75094600-75101200	Weak transcription	Colon Smooth Muscle	Colon
8	chr15:75094800-75099400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr15:75094800-75099400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr15:75094800-75099600	Weak transcription	Hela-S3	cervix
11	chr15:75095800-75101400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr15:75095800-75101600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr15:75096000-75109000	Weak transcription	H1 Cell Line	embryonic stem cell
14	chr15:75096200-75100400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr15:75096200-75105200	Weak transcription	Fetal Lung	lung
16	chr15:75096200-75109600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr15:75096400-75104800	Weak transcription	Right Ventricle	heart
18	chr15:75096600-75099400	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr15:75096600-75099400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr15:75096600-75100200	Weak transcription	Placenta	Placenta
21	chr15:75096600-75102400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr15:75096600-75107200	Weak transcription	Gastric	stomach
23	chr15:75096600-75107400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr15:75096800-75099800	Weak transcription	Primary B cells from peripheral blood	blood
25	chr15:75096800-75099800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr15:75096800-75100200	Weak transcription	Liver	Liver
27	chr15:75096800-75100400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr15:75096800-75100400	Weak transcription	Left Ventricle	heart
29	chr15:75096800-75100400	Weak transcription	Rectal Smooth Muscle	rectum
30	chr15:75096800-75100400	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr15:75096800-75100400	Weak transcription	HMEC	breast
32	chr15:75096800-75100600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
33	chr15:75096800-75100800	Weak transcription	Duodenum Smooth Muscle	Duodenum
34	chr15:75096800-75101600	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr15:75096800-75101600	Weak transcription	NHDF-Ad	bronchial
36	chr15:75096800-75101800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:75096800-75101800	Weak transcription	HSMM	muscle
38	chr15:75096800-75102000	Weak transcription	NHLF	lung
39	chr15:75096800-75102200	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr15:75096800-75102400	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr15:75096800-75104800	Weak transcription	Ovary	ovary
42	chr15:75096800-75107200	Weak transcription	Pancreas	Pancrea
43	chr15:75096800-75107200	Weak transcription	A549	lung
44	chr15:75096800-75107400	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr15:75096800-75107400	Weak transcription	HSMMtube	muscle
46	chr15:75096800-75109000	Weak transcription	Fetal Intestine Large	intestine
47	chr15:75096800-75109200	Weak transcription	HUES64 Cell Line	embryonic stem cell
48	chr15:75096800-75109400	Weak transcription	HUVEC	blood vessel
49	chr15:75096800-75109800	Weak transcription	NH-A	brain
50	chr15:75097000-75099400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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