Variant report

Variant	rs11632547
Chromosome Location	chr15:75031927-75031928
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11553762	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs11631294	0.88[ASN][1000 genomes]
rs11631682	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11631689	0.93[ASN][1000 genomes]
rs11631817	0.85[ASN][1000 genomes]
rs11632706	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11632814	0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11632822	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11633539	0.86[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11633861	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11636256	0.93[ASN][1000 genomes]
rs11637637	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16970170	0.87[YRI][hapmap]
rs16972511	0.86[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16972853	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs16973048	0.82[YRI][hapmap]
rs17861124	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17861125	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17861130	0.95[ASN][1000 genomes]
rs17861135	1.00[AFR][1000 genomes]
rs17861138	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17861139	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17861141	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17861142	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17861145	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2069519	1.00[CHB][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2069521	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2069522	1.00[CHB][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2069524	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2069525	1.00[CHB][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2069526	1.00[CHB][hapmap];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35197434	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35331038	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35408600	0.90[ASN][1000 genomes]
rs4646425	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4646427	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56066141	0.93[ASN][1000 genomes]
rs56748048	0.95[ASN][1000 genomes]
rs59902765	0.85[ASN][1000 genomes]
rs74025837	0.86[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74025839	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs74025842	0.93[ASN][1000 genomes]
rs74025843	0.93[ASN][1000 genomes]
rs74025847	0.93[ASN][1000 genomes]
rs936225	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	esv2763106	chr15:75014464-75034186	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11632547	SCAMP5	cis	multi-tissue	Pritchard

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75019400-75033800	Weak transcription	Right Atrium	heart
2	chr15:75023800-75041600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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