Variant report

Variant	rs17861135
Chromosome Location	chr15:75033862-75033863
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11631682	0.84[AFR][1000 genomes]
rs11632547	1.00[AFR][1000 genomes]
rs11632706	0.90[AFR][1000 genomes]
rs11632814	0.81[AFR][1000 genomes]
rs11632822	0.84[AFR][1000 genomes]
rs11633861	1.00[AFR][1000 genomes]
rs17861124	0.90[AFR][1000 genomes]
rs17861125	0.90[AFR][1000 genomes]
rs17861138	1.00[AFR][1000 genomes]
rs17861139	0.90[AFR][1000 genomes]
rs17861141	0.90[AFR][1000 genomes]
rs17861142	0.90[AFR][1000 genomes]
rs17861145	0.90[AFR][1000 genomes]
rs2069521	0.88[AFR][1000 genomes]
rs2069524	0.88[AFR][1000 genomes]
rs4646427	0.88[AFR][1000 genomes]
rs74025837	0.86[AFR][1000 genomes]
rs936225	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	esv2763106	chr15:75014464-75034186	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75023800-75041600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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