Variant report

Variant	rs11632822
Chromosome Location	chr15:75056881-75056882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:75052612..75054479-chr15:75056291..75058590,3	K562	blood:
2	chr15:75056268..75058478-chr15:75059962..75062462,2	K562	blood:
3	chr15:75055933..75058709-chr15:75257513..75259358,2	K562	blood:
4	chr15:75056268..75058478-chr15:75059962..75062607,3	K562	blood:
5	chr15:74726274..74728760-chr15:75055542..75058469,2	K562	blood:

Variant related genes	Relation type
ENSG00000138623	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11553762	0.87[ASN][1000 genomes]
rs11631294	0.90[ASN][1000 genomes]
rs11631682	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11631689	0.95[ASN][1000 genomes]
rs11631817	0.87[ASN][1000 genomes]
rs11632547	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11632706	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11632814	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11633539	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11633861	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11636256	0.95[ASN][1000 genomes]
rs11637637	0.87[ASN][1000 genomes]
rs16972511	0.95[ASN][1000 genomes]
rs16972853	0.87[ASN][1000 genomes]
rs17861124	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17861125	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17861130	0.92[ASN][1000 genomes]
rs17861135	0.84[AFR][1000 genomes]
rs17861138	0.84[AFR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17861139	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17861141	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17861142	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17861145	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2069519	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2069521	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2069522	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2069524	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2069525	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2069526	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35197434	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35331038	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35408600	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35603757	0.90[AFR][1000 genomes]
rs35738366	0.90[AFR][1000 genomes]
rs4646425	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4646427	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56066141	0.95[ASN][1000 genomes]
rs56748048	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59902765	0.87[ASN][1000 genomes]
rs74025837	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74025839	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74025842	0.95[ASN][1000 genomes]
rs74025843	0.95[ASN][1000 genomes]
rs74025847	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75044800-75062600	Weak transcription	Right Atrium	heart
2	chr15:75047200-75063000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr15:75054200-75057000	Enhancers	Fetal Muscle Trunk	muscle
4	chr15:75054800-75060600	Weak transcription	HepG2	liver
5	chr15:75055200-75063200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
6	chr15:75055400-75061000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr15:75055600-75060600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr15:75055600-75061000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr15:75055600-75061000	Weak transcription	HUVEC	blood vessel
10	chr15:75055600-75065800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:75056000-75060800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr15:75056000-75061000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr15:75056000-75061000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr15:75056000-75061000	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr15:75056000-75069000	Weak transcription	Lung	lung
16	chr15:75056200-75060400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr15:75056200-75061000	Weak transcription	HMEC	breast
18	chr15:75056200-75063200	Weak transcription	Spleen	Spleen
19	chr15:75056400-75059800	Weak transcription	Placenta	Placenta
20	chr15:75056400-75059800	Weak transcription	NHEK	skin
21	chr15:75056400-75060000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr15:75056400-75060000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr15:75056400-75061000	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr15:75056400-75061000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr15:75056400-75061000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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