Variant report

Variant	rs35603757
Chromosome Location	chr15:75078430-75078431
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr15:75077574-75083240	GM19193	blood:	n/a	n/a
2	RUNX3	chr15:75077412-75078648	GM12878	blood:	n/a	n/a
3	POLR2A	chr15:75077467-75078533	GM12878	blood:	n/a	n/a
4	POLR2A	chr15:75076731-75083396	GM12892	blood:	n/a	n/a
5	POLR2A	chr15:75072814-75083294	GM19099	blood:	n/a	n/a
6	POLR2A	chr15:75072482-75083351	GM12878	blood:	n/a	n/a
7	POLR2A	chr15:75074913-75078439	GM12878	blood:	n/a	n/a
8	MAX	chr15:75078044-75078495	GM12878	blood:	n/a	n/a
9	MTA3	chr15:75074835-75078490	GM12878	blood:	n/a	n/a
10	BHLHE40	chr15:75078129-75078670	GM12878	blood:	n/a	n/a
11	POLR2A	chr15:75077372-75078434	GM12892	blood:	n/a	n/a
12	POLR2A	chr15:75072699-75083327	GM12878	blood:	n/a	n/a
13	ZNF384	chr15:75077782-75078943	GM12878	blood:	n/a	n/a
14	RUNX3	chr15:75077392-75078819	GM12878	blood:	n/a	n/a
15	STAT5A	chr15:75077922-75083489	GM12878	blood:	n/a	chr15:75082120-75082129 chr15:75079426-75079438 chr15:75081561-75081573 chr15:75082897-75082904 chr15:75079521-75079528 chr15:75082119-75082128 chr15:75083308-75083315
16	NFIC	chr15:75077924-75078556	GM12878	blood:	n/a	n/a
17	POLR2A	chr15:75075052-75083417	GM12891	blood:	n/a	n/a
18	MXI1	chr15:75075571-75078430	GM12878	blood:	n/a	n/a
19	ELF1	chr15:75077909-75078502	GM12878	blood:	n/a	n/a
20	ZNF384	chr15:75078156-75078476	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr15:75064340..75065920-chr15:75077718..75079828,2	MCF-7	breast:
2	chr15:75073376..75079113-chr15:75130007..75137097,15	MCF-7	breast:
3	chr15:75072512..75079183-chr15:75180576..75186728,11	MCF-7	breast:
4	chr15:75073170..75080511-chr15:75126432..75130376,7	MCF-7	breast:
5	chr15:75078025..75080593-chr15:75113459..75116440,2	K562	blood:
6	chr15:75074156..75079604-chr15:75107384..75112501,9	MCF-7	breast:
7	chr15:75072350..75078841-chr15:75107920..75114107,12	MCF-7	breast:
8	chr15:74906678..74909061-chr15:75078128..75081929,4	MCF-7	breast:

Variant related genes	Relation type
CSK	TF binding region
ENSG00000140506	Chromatin interaction
ENSG00000179335	Chromatin interaction
ENSG00000260919	Chromatin interaction
ENSG00000178802	Chromatin interaction
ENSG00000140474	Chromatin interaction
ENSG00000261606	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11631682	0.90[AFR][1000 genomes]
rs11632822	0.90[AFR][1000 genomes]
rs11633539	1.00[AFR][1000 genomes]
rs2069521	0.85[AFR][1000 genomes]
rs2069524	0.85[AFR][1000 genomes]
rs35738366	1.00[AFR][1000 genomes]
rs4646427	0.85[AFR][1000 genomes]
rs56748048	1.00[AFR][1000 genomes]
rs61671857	0.85[AFR][1000 genomes]
rs74025837	0.87[AFR][1000 genomes]
rs74025839	0.80[AFR][1000 genomes]
rs74025850	0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75075000-75078800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr15:75075600-75080800	Enhancers	Fetal Heart	heart
3	chr15:75075600-75083400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
4	chr15:75075800-75079600	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
5	chr15:75075800-75082000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
6	chr15:75076000-75079800	Flanking Active TSS	Primary T cells from cord blood	blood
7	chr15:75076000-75080400	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr15:75076000-75080600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr15:75076000-75080800	Enhancers	Fetal Brain Male	brain
10	chr15:75076200-75079400	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
11	chr15:75076200-75080000	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr15:75076200-75080000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr15:75076200-75080000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr15:75076200-75080200	Enhancers	Psoas Muscle	Psoas
15	chr15:75076200-75080200	Enhancers	Stomach Mucosa	stomach
16	chr15:75076400-75079200	Weak transcription	A549	lung
17	chr15:75076400-75079800	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr15:75076400-75079800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
19	chr15:75076400-75080000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr15:75076400-75080000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr15:75076400-75082200	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr15:75076400-75083200	Enhancers	Colon Smooth Muscle	Colon
23	chr15:75076400-75083400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
24	chr15:75076400-75083400	Genic enhancers	Fetal Stomach	stomach
25	chr15:75076400-75083400	Enhancers	Right Ventricle	heart
26	chr15:75076400-75084200	Enhancers	Spleen	Spleen
27	chr15:75076400-75085800	Enhancers	Left Ventricle	heart
28	chr15:75076600-75078800	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr15:75076600-75078800	Enhancers	Stomach Smooth Muscle	stomach
30	chr15:75076600-75079200	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr15:75076600-75079800	Transcr. at gene 5' and 3'	Fetal Thymus	thymus
32	chr15:75076600-75080400	Enhancers	Brain Germinal Matrix	brain
33	chr15:75076600-75080800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:75076600-75080800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr15:75076600-75081000	Genic enhancers	Fetal Intestine Large	intestine
36	chr15:75076600-75082400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr15:75076600-75082600	Genic enhancers	NHEK	skin
38	chr15:75076600-75082800	Genic enhancers	Fetal Muscle Trunk	muscle
39	chr15:75076600-75083400	Enhancers	Right Atrium	heart
40	chr15:75076600-75083400	Enhancers	HMEC	breast
41	chr15:75076600-75084800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr15:75076800-75078600	Genic enhancers	NHLF	lung
43	chr15:75076800-75079200	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
44	chr15:75076800-75079400	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr15:75076800-75080000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr15:75076800-75081600	Genic enhancers	Fetal Intestine Small	intestine
47	chr15:75076800-75083200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
48	chr15:75077000-75078800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr15:75077000-75078800	Enhancers	Adipose Nuclei	Adipose
50	chr15:75077000-75078800	Weak transcription	HSMMtube	muscle

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