Variant report

Variant	rs74025847
Chromosome Location	chr15:75071019-75071020
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:7)
CpG islands
(count:0)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:7 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZBTB7A	chr15:75070999-75071239	K562	blood:	n/a	n/a
2	HDAC2	chr15:75070985-75071289	K562	blood:	n/a	n/a
3	RCOR1	chr15:75070973-75071191	K562	blood:	n/a	n/a
4	EP300	chr15:75071001-75071192	K562	blood:	n/a	n/a
5	GATA2	chr15:75070974-75071293	K562	blood:	n/a	n/a
6	TAL1	chr15:75070955-75071297	K562	blood:	n/a	n/a
7	TEAD4	chr15:75070903-75071296	K562	blood:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:75069513..75071369-chr15:75076004..75078063,2	K562	blood:
2	chr15:74914164..74916477-chr15:75070415..75071944,2	K562	blood:
3	chr15:75069556..75072054-chr15:75126670..75129004,2	MCF-7	breast:
4	chr15:75067632..75072081-chr15:75073195..75075797,6	MCF-7	breast:
5	chr15:75070902..75072861-chr15:75132402..75135175,2	MCF-7	breast:
6	chr15:75069997..75071811-chr15:75134111..75136567,2	K562	blood:

No data

Variant related genes	Relation type
CSK	TF binding region
ENSG00000140474	Chromatin interaction
ENSG00000179335	Chromatin interaction
ENSG00000103653	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11553762	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11631294	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11631682	0.95[ASN][1000 genomes]
rs11631689	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11631817	0.87[ASN][1000 genomes]
rs11632547	0.93[ASN][1000 genomes]
rs11632706	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11632814	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11632822	0.95[ASN][1000 genomes]
rs11633539	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11633861	0.90[ASN][1000 genomes]
rs11636256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11637637	0.87[ASN][1000 genomes]
rs16972511	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16972853	0.87[ASN][1000 genomes]
rs17861124	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17861125	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17861130	0.87[ASN][1000 genomes]
rs17861138	0.90[ASN][1000 genomes]
rs17861139	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17861141	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17861142	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17861145	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2069519	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2069521	0.93[ASN][1000 genomes]
rs2069522	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2069524	0.90[ASN][1000 genomes]
rs2069525	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2069526	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34755093	1.00[AFR][1000 genomes]
rs35197434	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35331038	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35408600	0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4646425	0.93[ASN][1000 genomes]
rs4646427	0.93[ASN][1000 genomes]
rs56066141	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56748048	0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59902765	0.87[ASN][1000 genomes]
rs74025837	0.95[ASN][1000 genomes]
rs74025839	0.95[ASN][1000 genomes]
rs74025842	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74025843	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904380	chr15:74869438-75142761	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv833055	chr15:74988344-75166288	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	46 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:75065600-75072600	Enhancers	Primary hematopoietic stem cells	blood
2	chr15:75065600-75073200	Weak transcription	Brain Angular Gyrus	brain
3	chr15:75065600-75073600	Enhancers	Fetal Intestine Large	intestine
4	chr15:75065600-75073600	Enhancers	Fetal Intestine Small	intestine
5	chr15:75065800-75072800	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr15:75066200-75073000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:75066400-75072400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr15:75066400-75072800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr15:75066600-75072600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr15:75067200-75072800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr15:75067400-75074200	Enhancers	Stomach Mucosa	stomach
12	chr15:75067600-75071200	Enhancers	Placenta	Placenta
13	chr15:75067600-75071800	Enhancers	Spleen	Spleen
14	chr15:75067600-75071800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
15	chr15:75067800-75071800	Enhancers	Small Intestine	intestine
16	chr15:75067800-75072000	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr15:75068000-75073200	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr15:75068800-75071200	Enhancers	Esophagus	oesophagus
19	chr15:75068800-75071400	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr15:75068800-75073400	Enhancers	Sigmoid Colon	Sigmoid Colon
21	chr15:75069000-75071200	Enhancers	Fetal Muscle Trunk	muscle
22	chr15:75069000-75072600	Enhancers	Liver	Liver
23	chr15:75069000-75072800	Enhancers	Thymus	Thymus
24	chr15:75069200-75071200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
25	chr15:75069200-75072400	Enhancers	Rectal Mucosa Donor 31	rectum
26	chr15:75069200-75072800	Enhancers	K562	blood
27	chr15:75069600-75072600	Enhancers	Duodenum Mucosa	Duodenum
28	chr15:75069600-75073800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr15:75069800-75071400	Enhancers	Colonic Mucosa	Colon
30	chr15:75069800-75071600	Enhancers	Rectal Mucosa Donor 29	rectum
31	chr15:75069800-75072400	Weak transcription	NHLF	lung
32	chr15:75069800-75072600	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr15:75069800-75072800	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
34	chr15:75069800-75073000	Weak transcription	Gastric	stomach
35	chr15:75070000-75072400	Enhancers	Primary T cells fromperipheralblood	blood
36	chr15:75070000-75072400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr15:75070000-75072800	Weak transcription	Fetal Brain Female	brain
38	chr15:75070000-75072800	Weak transcription	NHDF-Ad	bronchial
39	chr15:75070000-75073000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr15:75070000-75073200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr15:75070000-75073200	Weak transcription	Osteobl	bone
42	chr15:75070000-75073800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr15:75070200-75071200	Enhancers	Adipose Nuclei	Adipose
44	chr15:75070200-75072400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr15:75070200-75072400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr15:75070200-75072400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr15:75070200-75072400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr15:75070200-75072400	Weak transcription	Fetal Brain Male	brain
49	chr15:75070200-75072400	Weak transcription	Fetal Lung	lung
50	chr15:75070200-75072600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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