Variant report

Variant	rs4632588
Chromosome Location	chr3:178774176-178774177
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11711320	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11720081	0.81[EUR][1000 genomes]
rs1542	0.80[ASN][1000 genomes]
rs4245914	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4279147	0.88[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4280676	0.81[EUR][1000 genomes]
rs4315724	0.81[EUR][1000 genomes]
rs4337680	0.81[EUR][1000 genomes]
rs4377525	0.92[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4395442	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4417911	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4425305	0.86[ASN][1000 genomes]
rs4469018	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4501160	0.81[EUR][1000 genomes]
rs4505756	0.81[EUR][1000 genomes]
rs4552405	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4579062	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4607155	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4626139	0.81[EUR][1000 genomes]
rs4637331	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4955796	0.81[EUR][1000 genomes]
rs4955807	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4955810	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56115013	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6443614	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6443617	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6443618	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6772028	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6784495	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6790867	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6793769	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6793893	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6794165	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6794956	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6795238	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6800015	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7429173	0.81[EUR][1000 genomes]
rs7612363	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7639391	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7651510	0.81[EUR][1000 genomes]
rs7652946	0.81[EUR][1000 genomes]
rs9830482	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9831543	0.80[ASN][1000 genomes]
rs9835752	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9835765	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9846511	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs9860318	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9860749	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9878734	0.94[ASN][1000 genomes]
rs9879637	0.81[EUR][1000 genomes]
rs9880749	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998253	chr3:178622707-179196274	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	nsv536814	chr3:178622707-179196274	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
3	nsv461026	chr3:178661814-178886609	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv592649	chr3:178661814-178886609	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1009143	chr3:178731525-178783915	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	esv1799481	chr3:178733212-178782021	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
7	esv1792927	chr3:178734558-178877169	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
8	esv1841799	chr3:178739594-178884337	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:83 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:178746000-178784000	Weak transcription	Liver	Liver
2	chr3:178746000-178785200	Weak transcription	Thymus	Thymus
3	chr3:178753600-178784800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr3:178755600-178787800	Weak transcription	Aorta	Aorta
5	chr3:178756000-178775600	Weak transcription	Adipose Nuclei	Adipose
6	chr3:178756000-178780400	Weak transcription	Brain Hippocampus Middle	brain
7	chr3:178756000-178783600	Weak transcription	NHDF-Ad	bronchial
8	chr3:178756600-178781600	Weak transcription	HMEC	breast
9	chr3:178756600-178781800	Weak transcription	NHLF	lung
10	chr3:178756600-178783800	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr3:178756800-178788400	Weak transcription	Fetal Intestine Small	intestine
12	chr3:178756800-178788800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr3:178757200-178782200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:178764200-178781800	Weak transcription	Colon Smooth Muscle	Colon
15	chr3:178764200-178787000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr3:178764400-178775200	Weak transcription	Fetal Thymus	thymus
17	chr3:178764400-178780400	Weak transcription	HepG2	liver
18	chr3:178764400-178784600	Weak transcription	K562	blood
19	chr3:178764600-178780600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr3:178764600-178782400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr3:178764800-178775200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:178764800-178785200	Weak transcription	Pancreas	Pancrea
23	chr3:178764800-178787200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr3:178764800-178789000	Weak transcription	Lung	lung
25	chr3:178765000-178779800	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr3:178765000-178785400	Weak transcription	Gastric	stomach
27	chr3:178765000-178786800	Weak transcription	Dnd41	blood
28	chr3:178765200-178774600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr3:178765200-178775000	Weak transcription	NH-A	brain
30	chr3:178765200-178780200	Weak transcription	Duodenum Smooth Muscle	Duodenum
31	chr3:178765200-178781600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr3:178765200-178781600	Weak transcription	HSMMtube	muscle
33	chr3:178765200-178784600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr3:178765200-178789000	Weak transcription	Spleen	Spleen
35	chr3:178765400-178778400	Weak transcription	Osteobl	bone
36	chr3:178766800-178778800	Weak transcription	Primary T helper cells PMA-I stimulated	--
37	chr3:178766800-178779600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr3:178768400-178784000	Weak transcription	HUVEC	blood vessel
39	chr3:178768400-178788800	Weak transcription	Small Intestine	intestine
40	chr3:178768600-178780600	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr3:178768600-178788800	Weak transcription	Placenta	Placenta
42	chr3:178769000-178775400	Weak transcription	Primary T cells from cord blood	blood
43	chr3:178769200-178784000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr3:178769400-178780000	Weak transcription	Primary B cells from peripheral blood	blood
45	chr3:178769600-178782200	Weak transcription	Primary B cells from cord blood	blood
46	chr3:178769800-178783800	Weak transcription	Rectal Mucosa Donor 31	rectum
47	chr3:178770000-178774600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr3:178770000-178779000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr3:178770000-178783800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr3:178770200-178784800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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