Variant report

Variant	rs4633088
Chromosome Location	chr8:49530252-49530253
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49425428..49427661-chr8:49529540..49532467,2	MCF-7	breast:
2	chr8:49500327..49503275-chr8:49530144..49531878,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000233858	Chromatin interaction

rs_ID	r²[population]
rs10108217	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1502651	0.94[EUR][1000 genomes]
rs1510929	0.94[EUR][1000 genomes]
rs1510930	0.94[EUR][1000 genomes]
rs16937035	0.94[EUR][1000 genomes]
rs16937172	0.94[EUR][1000 genomes]
rs17623020	0.94[EUR][1000 genomes]
rs56038738	0.94[EUR][1000 genomes]
rs57556149	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983842	0.94[EUR][1000 genomes]
rs6996130	0.94[EUR][1000 genomes]
rs7012467	0.94[EUR][1000 genomes]
rs7013123	0.94[EUR][1000 genomes]
rs7013144	0.94[EUR][1000 genomes]
rs7017418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73678289	0.94[EUR][1000 genomes]
rs7813028	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7813928	0.94[EUR][1000 genomes]
rs7815783	0.94[EUR][1000 genomes]
rs7838494	0.94[EUR][1000 genomes]
rs7843782	0.94[EUR][1000 genomes]
rs9643364	0.94[EUR][1000 genomes]

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49518600-49532000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr8:49526400-49537800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr8:49527400-49532000	Enhancers	NHDF-Ad	bronchial
4	chr8:49527400-49532600	Enhancers	Fetal Muscle Leg	muscle
5	chr8:49527800-49532000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr8:49528400-49530400	Enhancers	Ovary	ovary
7	chr8:49528800-49532000	Enhancers	Fetal Stomach	stomach
8	chr8:49529000-49530600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr8:49529000-49530800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr8:49529000-49532000	Enhancers	Osteobl	bone
11	chr8:49529000-49532200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr8:49529000-49532200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr8:49529000-49532200	Enhancers	HSMM	muscle
14	chr8:49529000-49532400	Enhancers	Breast Myoepithelial Primary Cells	Breast
15	chr8:49529000-49532400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr8:49529200-49531600	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr8:49529200-49532000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr8:49529200-49532600	Weak transcription	Right Ventricle	heart
19	chr8:49529600-49531200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr8:49529600-49532200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr8:49529800-49532000	Weak transcription	Right Atrium	heart
22	chr8:49530000-49530400	Enhancers	Placenta	Placenta
23	chr8:49530000-49530600	Enhancers	Fetal Kidney	kidney
24	chr8:49530000-49531400	Weak transcription	Fetal Muscle Trunk	muscle
25	chr8:49530000-49531800	Weak transcription	Left Ventricle	heart
26	chr8:49530000-49532200	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr8:49530000-49532200	Weak transcription	HSMMtube	muscle
28	chr8:49530200-49530400	Enhancers	Skeletal Muscle Male	skeletal muscle
29	chr8:49530200-49531800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr8:49530200-49531800	Weak transcription	NHLF	lung
31	chr8:49530200-49532000	Weak transcription	Adipose Nuclei	Adipose
32	chr8:49530200-49532200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr8:49530200-49532200	Weak transcription	HMEC	breast
34	chr8:49530200-49532400	Weak transcription	Fetal Lung	lung
35	chr8:49530200-49534000	Weak transcription	Colon Smooth Muscle	Colon
36	chr8:49530200-49534200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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