Variant report

Variant	rs56038738
Chromosome Location	chr8:49294827-49294828
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:68)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:68 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr8:49292973-49294946	IMR90	lung:	n/a	n/a
2	CTCF	chr8:49294721-49294879	K562	blood:	n/a	n/a
3	CTCF	chr8:49294820-49294970	HepG2	liver:	n/a	n/a
4	CTCF	chr8:49294680-49294899	SK-N-SH_RA	brain:	n/a	n/a
5	CTCF	chr8:49294585-49294883	HUVEC	blood vessel:	n/a	n/a
6	CTCF	chr8:49294820-49294970	K562	blood:	n/a	n/a
7	CTCF	chr8:49294700-49294850	HEK293	kidney:	n/a	n/a
8	CTCF	chr8:49294757-49294899	H1-hESC	embryonic stem cell:	n/a	n/a
9	CTCF	chr8:49294760-49294910	WERI-Rb-1	eye:	n/a	n/a
10	CTCF	chr8:49294738-49294866	HepG2	liver:	n/a	n/a
11	CTCF	chr8:49294799-49294845	GM19240	blood:	n/a	n/a
12	TAF1	chr8:49294459-49294836	SK-N-SH	brain:	n/a	n/a
13	CTCF	chr8:49294549-49294895	Gliobla	brain:	n/a	n/a
14	CTCF	chr8:49294655-49294917	MCF-7	breast:	n/a	n/a
15	CTCF	chr8:49294760-49294910	SK-N-SH_RA	brain:	n/a	n/a
16	CTCF	chr8:49294780-49294930	GM12878	blood:	n/a	n/a
17	CTCF	chr8:49294740-49294901	NHEK	skin:	n/a	n/a
18	RAD21	chr8:49294547-49294946	SK-N-SH_RA	brain:	n/a	n/a
19	RAD21	chr8:49294646-49294936	HepG2	liver:	n/a	n/a
20	CTCF	chr8:49294552-49295028	MCF-7	breast:	n/a	n/a
21	RAD21	chr8:49294450-49294967	SK-N-SH_RA	brain:	n/a	n/a
22	CTCF	chr8:49294763-49294868	A549	lung:	n/a	n/a
23	CTCF	chr8:49294583-49295025	MCF-7	breast:	n/a	n/a
24	RAD21	chr8:49294543-49295027	MCF-7	breast:	n/a	n/a
25	CTCF	chr8:49294760-49294910	Hela-S3	cervix:	n/a	n/a
26	CTCF	chr8:49294680-49294830	HAc	cerebellar:	n/a	n/a
27	CTCF	chr8:49294740-49294890	AG09309	skin:	n/a	n/a
28	CTCF	chr8:49294720-49294870	BE2_C	brain:	n/a	n/a
29	CTCF	chr8:49294506-49294940	IMR90	lung:	n/a	n/a
30	CTCF	chr8:49294720-49294870	SK-N-SH_RA	brain:	n/a	n/a
31	CTCF	chr8:49294646-49294938	MCF-7	breast:	n/a	n/a
32	CTCF	chr8:49294800-49294950	BJ	skin:	n/a	n/a
33	CTCF	chr8:49294782-49294834	Medullo	brain:	n/a	n/a
34	CTCF	chr8:49294660-49294930	HAc	cerebellar:	n/a	n/a
35	CTCF	chr8:49294680-49294830	NHDF-neo	bronchial:	n/a	n/a
36	CTCF	chr8:49294740-49294890	GM12865	blood:	n/a	n/a
37	CTCF	chr8:49294608-49294927	MCF-7	breast:	n/a	n/a
38	CTCF	chr8:49294680-49294830	BE2_C	brain:	n/a	n/a
39	RAD21	chr8:49294543-49295045	MCF-7	breast:	n/a	n/a
40	CTCF	chr8:49294700-49294850	HBMEC	blood vessel:	n/a	n/a
41	CTCF	chr8:49294764-49294923	K562	blood:	n/a	n/a
42	RAD21	chr8:49294541-49294956	A549	lung:	n/a	n/a
43	CTCF	chr8:49294752-49294880	Hela-S3	cervix:	n/a	n/a
44	CTCF	chr8:49294680-49294830	AG04449	skin:	n/a	n/a
45	RAD21	chr8:49294572-49295059	A549	lung:	n/a	n/a
46	CHD1	chr8:49292125-49295009	IMR90	lung:	n/a	chr8:49293429-49293439
47	RAD21	chr8:49294537-49294960	H1-hESC	embryonic stem cell:	n/a	n/a
48	CTCF	chr8:49294672-49294914	HepG2	liver:	n/a	n/a
49	CTCF	chr8:49294800-49294832	GM12878	blood:	n/a	n/a
50	CTCF	chr8:49294591-49294886	ProgFib	skin:	n/a	n/a

No data

Variant related genes	Relation type
RPL29P19	TF binding region

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10108217	0.94[EUR][1000 genomes]
rs1317527	0.93[ASN][1000 genomes]
rs13250982	0.93[ASN][1000 genomes]
rs13273913	0.93[ASN][1000 genomes]
rs1502651	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1510929	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1510930	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16937035	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs16937122	0.93[ASN][1000 genomes]
rs16937172	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17623020	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs34098567	0.93[ASN][1000 genomes]
rs34634731	0.93[ASN][1000 genomes]
rs35621163	0.93[ASN][1000 genomes]
rs35687493	0.93[ASN][1000 genomes]
rs36018304	0.93[ASN][1000 genomes]
rs36084713	0.93[ASN][1000 genomes]
rs4546689	0.93[ASN][1000 genomes]
rs4633088	0.94[EUR][1000 genomes]
rs57556149	0.94[EUR][1000 genomes]
rs6983842	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6990374	0.93[ASN][1000 genomes]
rs6991400	0.93[ASN][1000 genomes]
rs6992602	0.93[ASN][1000 genomes]
rs6996130	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7002586	0.93[ASN][1000 genomes]
rs7012467	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7012795	0.93[ASN][1000 genomes]
rs7013123	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7013144	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7017418	0.94[EUR][1000 genomes]
rs71511915	0.93[ASN][1000 genomes]
rs73678289	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7813028	1.00[EUR][1000 genomes]
rs7813928	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7815397	0.93[ASN][1000 genomes]
rs7815783	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7819527	0.93[ASN][1000 genomes]
rs7831832	0.93[ASN][1000 genomes]
rs7837292	0.94[EUR][1000 genomes]
rs7838494	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7843782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs907177	0.93[ASN][1000 genomes]
rs955820	1.00[ASN][1000 genomes]
rs9643364	1.00[EUR][1000 genomes]
rs9694327	0.90[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49293000-49295000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:49293600-49295200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr8:49293800-49295000	Enhancers	Fetal Muscle Leg	muscle
4	chr8:49293800-49295000	Enhancers	Lung	lung
5	chr8:49293800-49303000	Weak transcription	Aorta	Aorta
6	chr8:49294000-49295000	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr8:49294000-49295000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr8:49294000-49295000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
9	chr8:49294000-49295000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr8:49294000-49295000	Flanking Active TSS	NHDF-Ad	bronchial
11	chr8:49294000-49295000	Flanking Active TSS	Osteobl	bone
12	chr8:49294200-49295000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:49294200-49295000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr8:49294200-49295000	Genic enhancers	Fetal Stomach	stomach
15	chr8:49294200-49296400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr8:49294400-49295000	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr8:49294400-49295000	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr8:49294600-49295000	Enhancers	Placenta	Placenta
19	chr8:49294600-49296000	Weak transcription	Gastric	stomach
20	chr8:49294600-49296200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr8:49294600-49308400	Weak transcription	Fetal Lung	lung
22	chr8:49294800-49295000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr8:49294800-49295000	Transcr. at gene 5' and 3'	Placenta Amnion	Placenta Amnion
24	chr8:49294800-49295000	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
25	chr8:49294800-49295200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr8:49294800-49296200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr8:49294800-49296200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr8:49294800-49296400	Weak transcription	HUVEC	blood vessel
29	chr8:49294800-49297400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr8:49294800-49302400	Weak transcription	HSMMtube	muscle
31	chr8:49294800-49308800	Weak transcription	NHLF	lung
32	chr8:49294800-49309600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links