Variant report

Variant	rs907177
Chromosome Location	chr8:49347472-49347473
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49347064..49348779-chr8:49356019..49358997,2	MCF-7	breast:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1317527	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13250982	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13273913	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1502651	1.00[ASN][1000 genomes]
rs1510929	1.00[ASN][1000 genomes]
rs1510930	1.00[ASN][1000 genomes]
rs16937035	1.00[ASN][1000 genomes]
rs16937122	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16937172	1.00[ASN][1000 genomes]
rs17623020	1.00[ASN][1000 genomes]
rs34098567	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34634731	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35621163	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35687493	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36018304	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36084713	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4546689	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56038738	0.93[ASN][1000 genomes]
rs6983842	1.00[ASN][1000 genomes]
rs6990374	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6991400	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6992602	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6996130	1.00[ASN][1000 genomes]
rs7002586	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7012795	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7013123	1.00[ASN][1000 genomes]
rs7013144	1.00[ASN][1000 genomes]
rs7017418	1.00[CHB][hapmap]
rs71511915	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73678289	1.00[ASN][1000 genomes]
rs7813928	0.93[ASN][1000 genomes]
rs7815397	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815783	1.00[ASN][1000 genomes]
rs7819527	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7831832	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7837292	1.00[CHB][hapmap]
rs7838494	1.00[ASN][1000 genomes]
rs7843782	1.00[ASN][1000 genomes]
rs955820	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9694327	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49343800-49354000	Weak transcription	Fetal Intestine Small	intestine
2	chr8:49345000-49352400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr8:49345600-49349200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr8:49345600-49350800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr8:49345600-49350800	Weak transcription	Ovary	ovary
6	chr8:49345600-49351200	Weak transcription	Spleen	Spleen
7	chr8:49345800-49351800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr8:49346000-49347800	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr8:49346200-49350400	Weak transcription	Aorta	Aorta
10	chr8:49346400-49349400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr8:49346400-49349600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr8:49346400-49350800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr8:49346400-49352400	Weak transcription	Adipose Nuclei	Adipose
14	chr8:49346800-49351200	Weak transcription	Fetal Lung	lung
15	chr8:49347000-49347600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr8:49347000-49350800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr8:49347200-49347600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr8:49347200-49348200	ZNF genes & repeats	Fetal Stomach	stomach
19	chr8:49347200-49351200	Weak transcription	Lung	lung
20	chr8:49347400-49347600	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr8:49347400-49351400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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