Variant report

Variant	rs6990374
Chromosome Location	chr8:49415210-49415211
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49410603..49416175-chr8:49423365..49428715,9	MCF-7	breast:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1317527	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13250982	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13273913	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1502651	1.00[ASN][1000 genomes]
rs1510929	1.00[ASN][1000 genomes]
rs1510930	1.00[ASN][1000 genomes]
rs16937035	1.00[ASN][1000 genomes]
rs16937122	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16937172	1.00[ASN][1000 genomes]
rs17623020	1.00[ASN][1000 genomes]
rs34098567	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34634731	0.91[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35621163	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35687493	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36018304	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36084713	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4546689	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56038738	0.93[ASN][1000 genomes]
rs6983842	1.00[ASN][1000 genomes]
rs6991400	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6992602	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6996130	1.00[ASN][1000 genomes]
rs7002586	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7012795	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7013123	1.00[ASN][1000 genomes]
rs7013144	1.00[ASN][1000 genomes]
rs7017418	1.00[CHB][hapmap]
rs71511915	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73678289	1.00[ASN][1000 genomes]
rs7813928	0.93[ASN][1000 genomes]
rs7815397	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815783	1.00[ASN][1000 genomes]
rs7819527	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7831832	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7837292	1.00[CHB][hapmap]
rs7838494	1.00[ASN][1000 genomes]
rs7843782	1.00[ASN][1000 genomes]
rs905353	1.00[YRI][hapmap]
rs907177	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs955820	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9694327	0.96[ASN][1000 genomes]

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49413000-49415400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr8:49413200-49415600	Enhancers	NHDF-Ad	bronchial
3	chr8:49413200-49415800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr8:49413400-49415600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr8:49413400-49415600	Enhancers	Osteobl	bone
6	chr8:49413400-49416800	Enhancers	Fetal Lung	lung
7	chr8:49413600-49418800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr8:49414200-49420000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr8:49414400-49415400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr8:49414400-49415600	Weak transcription	HSMMtube	muscle
11	chr8:49414400-49416600	Weak transcription	Fetal Muscle Trunk	muscle
12	chr8:49414400-49416600	Weak transcription	Pancreas	Pancrea
13	chr8:49414400-49419800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr8:49414600-49415400	Weak transcription	Esophagus	oesophagus
15	chr8:49414600-49415400	Enhancers	A549	lung
16	chr8:49414600-49416400	Weak transcription	Hela-S3	cervix
17	chr8:49414600-49416600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr8:49414600-49416600	Weak transcription	Placenta	Placenta
19	chr8:49414600-49416800	Weak transcription	Stomach Mucosa	stomach
20	chr8:49414600-49418600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr8:49414600-49418600	Weak transcription	Fetal Muscle Leg	muscle
22	chr8:49414600-49427000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr8:49414800-49415400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr8:49414800-49415400	Weak transcription	HSMM	muscle
25	chr8:49414800-49416400	Weak transcription	NHEK	skin
26	chr8:49415200-49415400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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