Variant report

Variant	rs1317527
Chromosome Location	chr8:49343015-49343016
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:49338684..49341580-chr8:49342826..49345610,2	MCF-7	breast:
2	chr8:49339618..49341407-chr8:49342109..49344898,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-EFCAB1-7	chr8:49340703-49343219	NONHSAT126478
2	lnc-EFCAB1-7	chr8:49342693-49343386	NONHSAT126479

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs13250982	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13273913	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1502651	1.00[ASN][1000 genomes]
rs1510929	1.00[ASN][1000 genomes]
rs1510930	1.00[ASN][1000 genomes]
rs16937035	1.00[ASN][1000 genomes]
rs16937122	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16937172	1.00[ASN][1000 genomes]
rs17623020	1.00[ASN][1000 genomes]
rs34098567	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34634731	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35621163	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35687493	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36018304	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36084713	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4546689	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56038738	0.93[ASN][1000 genomes]
rs6983842	1.00[ASN][1000 genomes]
rs6990374	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6991400	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6992602	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6996130	1.00[ASN][1000 genomes]
rs7002586	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7012795	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7013123	1.00[ASN][1000 genomes]
rs7013144	1.00[ASN][1000 genomes]
rs7017418	1.00[CHB][hapmap]
rs71511915	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73678289	1.00[ASN][1000 genomes]
rs7813928	0.93[ASN][1000 genomes]
rs7815397	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7815783	1.00[ASN][1000 genomes]
rs7819527	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7831832	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7837292	1.00[CHB][hapmap]
rs7838494	1.00[ASN][1000 genomes]
rs7843782	1.00[ASN][1000 genomes]
rs907177	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs955820	0.86[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9694327	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:49339400-49345000	Enhancers	Breast Myoepithelial Primary Cells	Breast
2	chr8:49339400-49346400	Enhancers	Fetal Muscle Leg	muscle
3	chr8:49339800-49344800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr8:49340000-49343200	Enhancers	Ovary	ovary
5	chr8:49340000-49343400	Enhancers	Colonic Mucosa	Colon
6	chr8:49340000-49345000	Enhancers	Brain Cingulate Gyrus	brain
7	chr8:49340000-49345000	Enhancers	Placenta	Placenta
8	chr8:49340200-49343200	Enhancers	NH-A	brain
9	chr8:49340200-49343600	Enhancers	Fetal Heart	heart
10	chr8:49340200-49344200	Enhancers	Fetal Intestine Large	intestine
11	chr8:49340200-49344400	Enhancers	Rectal Mucosa Donor 31	rectum
12	chr8:49340200-49344600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr8:49340200-49345000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr8:49340400-49345000	Enhancers	Duodenum Mucosa	Duodenum
15	chr8:49340600-49344000	Weak transcription	Aorta	Aorta
16	chr8:49340600-49344800	Enhancers	Fetal Stomach	stomach
17	chr8:49340800-49344400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr8:49341200-49343200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
19	chr8:49341200-49343800	Enhancers	H1 Cell Line	embryonic stem cell
20	chr8:49341200-49343800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr8:49341200-49343800	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr8:49341200-49344400	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr8:49341200-49346200	Enhancers	Right Atrium	heart
24	chr8:49341200-49346400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr8:49341400-49343800	Enhancers	Fetal Intestine Small	intestine
26	chr8:49341400-49344200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr8:49341400-49344200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
28	chr8:49341400-49344200	Enhancers	Colon Smooth Muscle	Colon
29	chr8:49341600-49343400	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr8:49341600-49343800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr8:49341600-49344000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr8:49341600-49345000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr8:49341800-49343200	Weak transcription	Fetal Brain Female	brain
34	chr8:49341800-49343600	Weak transcription	Brain Angular Gyrus	brain
35	chr8:49341800-49343600	Weak transcription	Brain Substantia Nigra	brain
36	chr8:49342000-49343800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
37	chr8:49342200-49343200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr8:49342200-49343200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr8:49342200-49343800	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr8:49342400-49343600	Weak transcription	Gastric	stomach
41	chr8:49342400-49343800	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr8:49342400-49343800	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr8:49342400-49344000	Weak transcription	Spleen	Spleen
44	chr8:49342400-49344200	Weak transcription	Psoas Muscle	Psoas
45	chr8:49342600-49343200	Flanking Active TSS	Fetal Muscle Trunk	muscle
46	chr8:49342600-49343400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr8:49342600-49343600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr8:49342600-49343800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr8:49342600-49343800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr8:49342600-49343800	Flanking Active TSS	NHLF	lung

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